YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|241880915, gi...
Organism:	Desulfovibrio vulgaris RCH1
Length:	214 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|241880915, gi....

Description	E-value	Query Range	Subject Range
gi\|120562457, gi... - gi\|120602228\|ref\|YP_966628.1\| antibiotic acetyltransferase [Desulfovibrio vulgaris subsp. vulgaris D...	182.0	[0..2]	[214..28]
gi\|78359937, gi\|... - gi\|78368025\|ref\|ZP_00838280.1\| transferase hexapeptide repeat [Shewanella sp. PV-4], gi\|78359937\|gb\|...	162.0	[0..4]	[208..3]
gi\|24375781, gi\|... - gi\|24375781\|ref\|NP_719824.1\| chloramphenicol acetyltransferase [Shewanella oneidensis MR-1], gi\|2435... SO4299 - chloramphenicol acetyltransferase	162.0	[0..4]	[208..3]
gi\|30387188, gi\|... - gi\|30387188\|ref\|NP_848167.1\| CatB2 [Pasteurella multocida], gi\|30314011\|gb\|AAP15294.1\| chloramphenic...	162.0	[0..4]	[208..3]
gi\|3088627 - gi\|3088627\|gb\|AAC14737.1\| chloramphenicol acetyltransferase [Plasmid NR79] CAT4_ECOLI, CAT4... - Chloramphenicol acetyltransferase OS=Escherichia coli GN=catB2 PE=3 SV=1, Chloramphenicol acetyltran...	161.0	[0..4]	[208..3]
gi\|213958579 - gi\|213958579\|gb\|AAC14737.2\| chloramphenicol acetyltransferase [Plasmid NR79] gi\|24209734 - gi\|24209734\|gb\|AAN41434.1\| chloramphenicol acetyltransferase [uncultured bacterium] gi\|22266156 - gi\|22266156\|emb\|CAD31710.1\| chloramphenicol acetyltransferase [Salmonella enteritidis] gi\|22266156\|emb\|... - chloramphenicol acetyltransferase [Salmonella enteritidis] gi\|190410292, gi... - gi\|63146066\|gb\|AAY33967.1\| chloramphenicol acetyltransferase [Klebsiella pneumoniae], gi\|190410292\|r... gi\|215262450 - gi\|215262450\|emb\|CAT00057.1\| chloramphenicol acetyltransferase [Aeromonas sobria] CAT4_ECOLX - Chloramphenicol acetyltransferase OS=Escherichia coli GN=catB2 PE=3 SV=2 gi\|71060507 - gi\|71060507\|emb\|CAI56201.1\| chloramphenicol acetyltransferase [Bordetella bronchiseptica] gi\|225393064, gi... - gi\|74476630\|gb\|ABA08386.1\| chloramphenicol acetyltransferase [Acinetobacter baumannii], gi\|225393064... gi\|88911235 - gi\|88911235\|gb\|ABD58910.1\| CatB2 [Pseudomonas aeruginosa]	160.0	[0..4]	[208..3]
gi\|7407121, gi\|7... - gi\|7407121\|gb\|AAF61918.1\|AF227506_1 chloramphenicol acetyltransferase [Klebsiella pneumoniae], gi\|73... gi\|22203987 - gi\|22203987\|gb\|AAM92461.1\| chloramphenicol acetyltransferase [Salmonella enterica subsp. enterica se... gi\|76495975 - gi\|76495975\|gb\|ABA43630.1\| chloramphenicol acetyltransferase variant [Pseudomonas aeruginosa] gi\|60101777, gi\|... - gi\|60101777\|gb\|AAX14005.1\| chloramphenicol acetyltransferase [Acinetobacter baumannii], gi\|197725582... gi\|118480542 - gi\|118480542\|gb\|ABK92279.1\| chloramphenicol acetyltransferase [Aeromonas hydrophila] gi\|146217029 - gi\|146217029\|gb\|ABQ10577.1\| muconate cycloisomerase [Pantoea agglomerans]	158.0	[0..4]	[210..3]
gi\|83363203, gi\|... - gi\|83375392\|ref\|ZP_00920153.1\| similar to Acetyltransferase (isoleucine patch superfamily) [Rhodobac...	158.0	[0..6]	[208..136]
gi\|46362005 - gi\|46362005\|gb\|AAS89471.1\| chloramphenicol acetyltransferase [Acinetobacter baumannii]	158.0	[0..4]	[210..3]

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Predicted Domain #1

Region A:
Residues: [1-214]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDSPFRSPF EGIPLSQQVT NPNIRVGRFS YYSGYYHGHG FDDCARYLAP DRDDVDRLVI  60
   61 GSFCSIGSGA SFIMAGNQGH QLEWAATFPF FYMQDEAAFS GAVDGFVRAG DTLVGNDVWI 120
  121 GTEAMIMPGV SIGDGAVIGS RALVTRDVEP YSIVGGNPAK FIRKRFDEEN IALLLEMQWW 180
  181 DWPLERLHEA MPLLCASRIR DLHTYWRGWC DTTR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	35.522879
Match:	1xatA
Description:	STRUCTURE OF THE HEXAPEPTIDE XENOBIOTIC ACETYLTRANSFERASE FROM PSEUDOMONAS AERUGINOSA
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.83213120696425	bayes_pls_golite062009
O-acyltransferase activity	1.71880487653974	bayes_pls_golite062009
O-acetyltransferase activity	1.31478733177395	bayes_pls_golite062009
transferase activity	0.819584274944333	bayes_pls_golite062009
acetyltransferase activity	0.80907457868323	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: