YRC Public Data Repository - Protein Structure Prediction

Protein:	LPXC1_ARATH, LPX...
Organism:	Arabidopsis thaliana
Length:	326 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for LPXC1_ARATH, LPX....

Description	E-value	Query Range	Subject Range
gi\|62320970 - gi\|62320970\|dbj\|BAD94001.1\| hypothetical protein [Arabidopsis thaliana]	450.0	[0..1]	[326..1]
gi\|149748188, gi... - gi\|153838425\|ref\|ZP_01991092.1\| UDP-3-0-acyl N-acetylglucosamine deacetylase [Vibrio parahaemolyticu... LPXC_VIBPA - UDP-3-O-acyl-N-acetylglucosamine deacetylase OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD ... LPXC_VIBPA - UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase OS=Vibrio parahaemolyticus GN=lpxC PE=3...	431.0	[0..37]	[326..2]
gi\|91226831, gi\|... - gi\|91226831\|ref\|ZP_01261484.1\| UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [Vibrio ...	428.0	[0..37]	[326..2]
gi\|254849518, gi... - gi\|75828904\|ref\|ZP_00758234.1\| COG0774: UDP-3-O-acyl-N-acetylglucosamine deacetylase [Vibrio cholera... gi\|116218659, gi... - gi\|75817788\|ref\|ZP_00748077.1\| COG0774: UDP-3-O-acyl-N-acetylglucosamine deacetylase [Vibrio cholera... LPXC_VIBC3 - UDP-3-O-acyl-N-acetylglucosamine deacetylase OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Cla... LPXC_VIBCM - UDP-3-O-acyl-N-acetylglucosamine deacetylase OS=Vibrio cholerae serotype O1 (strain M66-2) GN=lpxC P... gi\|75816497, gi\|... - gi\|75816497\|ref\|ZP_00746966.1\| COG0774: UDP-3-O-acyl-N-acetylglucosamine deacetylase [Vibrio cholera... gi\|229507542, gi... - gi\|229507542\|ref\|ZP_04397047.1\| UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [Vibrio... gi\|229514025, gi... - gi\|229514025\|ref\|ZP_04403487.1\| UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [Vibrio... gi\|229519398, gi... - gi\|229519398\|ref\|ZP_04408841.1\| UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [Vibrio... gi\|229524382, gi... - gi\|229524382\|ref\|ZP_04413787.1\| UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [Vibrio... gi\|229528617, gi... - gi\|229528617\|ref\|ZP_04418007.1\| UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [Vibrio... LPXC_VIBCH - UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase OS=Vibrio cholerae GN=lpxC PE=3 SV=1 gi\|229369703, gi... - gi\|229607048\|ref\|YP_002877696.1\| UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [Vibri... gi\|153825904, gi... - gi\|153825904\|ref\|ZP_01978571.1\| UDP-3-O-3-hydroxymyristoyl N-acetylglucosamine deacetylase [Vibrio c... LPXC_VIBCH - UDP-3-O-acyl-N-acetylglucosamine deacetylase OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El ... gi\|153819989, gi... - gi\|153819989\|ref\|ZP_01972656.1\| UDP-3-O-3-hydroxymyristoyl N-acetylglucosamine deacetylase [Vibrio c... gi\|229512262, gi... - gi\|229512262\|ref\|ZP_04401741.1\| UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [Vibrio...	428.0	[0..37]	[326..2]
LPXC_VIBVU - UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase OS=Vibrio vulnificus GN=lpxC PE=3 SV=1 LPXC_VIBVU - UDP-3-O-acyl-N-acetylglucosamine deacetylase OS=Vibrio vulnificus (strain CMCP6) GN=lpxC PE=3 SV=1 LPXC_VIBVY - UDP-3-O-acyl-N-acetylglucosamine deacetylase OS=Vibrio vulnificus (strain YJ016) GN=lpxC PE=3 SV=1	426.0	[0..37]	[326..2]
gi\|150260404, gi... - gi\|150260404\|ref\|ZP_01917132.1\| UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [Yersin... gi\|145600336, gi... - gi\|145600336\|ref\|YP_001164412.1\| UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [Yersi... gi\|167426450, gi... - gi\|167426450\|ref\|ZP_02318203.1\| UDP-3-0-acyl N-acetylglucosamine deacetylase [Yersinia pestis biovar... gi\|167421900, gi... - gi\|167421900\|ref\|ZP_02313653.1\| UDP-3-0-acyl N-acetylglucosamine deacetylase [Yersinia pestis biovar... gi\|22127494, gi\|... - gi\|22127494\|ref\|NP_670917.1\| UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [Yersinia ... gi\|25300229 - gi\|25300229\|pir\|\|AF0069 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase (EC 3.5.1.-) [i... gi\|115346368, gi... - gi\|16120889\|ref\|NP_404202.1\| UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [Yersinia ... gi\|108810592, gi... - gi\|108810592\|ref\|YP_646359.1\| UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [Yersinia... gi\|45438224, gi\|... - gi\|45443355\|ref\|NP_994894.1\| UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [Yersinia ... gi\|108809531, gi... - gi\|108809531\|ref\|YP_653447.1\| UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [Yersinia... gi\|165928192, gi... - gi\|165928192\|ref\|ZP_02224024.1\| UDP-3-0-acyl N-acetylglucosamine deacetylase [Yersinia pestis biovar... gi\|162419483, gi... - gi\|162419483\|ref\|YP_001607290.1\| UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [Yersi... gi\|167401283, gi... - gi\|167401283\|ref\|ZP_02306783.1\| UDP-3-0-acyl N-acetylglucosamine deacetylase [Yersinia pestis biovar... gi\|166211861, gi... - gi\|166211861\|ref\|ZP_02237896.1\| UDP-3-0-acyl N-acetylglucosamine deacetylase [Yersinia pestis biovar... gi\|166008906, gi... - gi\|166008906\|ref\|ZP_02229804.1\| UDP-3-0-acyl N-acetylglucosamine deacetylase [Yersinia pestis biovar... gi\|165914225, gi... - gi\|165937813\|ref\|ZP_02226374.1\| UDP-3-0-acyl N-acetylglucosamine deacetylase [Yersinia pestis biovar...	426.0	[0..35]	[325..5]
gi\|54310298, gi\|... - gi\|54310298\|ref\|YP_131318.1\| UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [Photobact...	426.0	[0..37]	[326..13]
gi\|89102558 - gi\|89102558\|ref\|ZP_01175182.1\| COG0774: UDP-3-O-acyl-N-acetylglucosamine deacetylase [Yersinia pesti... gi\|51595044, gi\|... - gi\|51595044\|ref\|YP_069235.1\| UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [Yersinia ... gi\|77631674, gi\|... - gi\|77631674\|ref\|ZP_00794260.1\| COG0774: UDP-3-O-acyl-N-acetylglucosamine deacetylase [Yersinia pseud... gi\|169752261, gi... - gi\|170025727\|ref\|YP_001722232.1\| UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [Yersi... gi\|77633649 - gi\|77633649\|ref\|ZP_00795771.1\| COG0774: UDP-3-O-acyl-N-acetylglucosamine deacetylase [Yersinia pesti... gi\|186697076, gi... - gi\|186894050\|ref\|YP_001871162.1\| UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [Yersi...	426.0	[0..35]	[325..1]
LPXC_VIBF1 - UDP-3-O-acyl-N-acetylglucosamine deacetylase OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=lpxC...	426.0	[0..37]	[326..2]

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Predicted Domain #1

Region A:
Residues: [1-326]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRLPVTVKAT KPSFLVIWIR YSSAASSPTV SLNPSGRLQQ TLAGSVEVKG KSLHSGKFST  60
   61 VKLNPEIAGA GRFFEFRSRF IPASIEFAQE SPLCTTLLKD ELKIRTVEHL LSALEAKGVD 120
  121 NCRIQIESES SDDREVEVPI FDGSAKEWVD AIQGVGINAA QNHDGESVEK MVAHVNKPVY 180
  181 VCKNDTFVAA FPALETRITC GIDFPQVPAI GCQWFSWRPI HESSFAKDIA SSRTFCVYEE 240
  241 VERMREAGLI KGGSLDNAIV CSAEHGWMNP PLRFDDEACR HKILDLIGDL SLVSRGGNGG 300
  301 LPVAHIVAYK AGHALHTDLA RHLTMD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	119.0
Match:	2vesA
Description:	No description for 2vesA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.2	NCBI nr	03/2009
PSI-BLAST	2.2.22	FFAS	ffas03
PDB	10/2008	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits