YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|254039030, gi...
Organism:	Escherichia sp. 1_1_43
Length:	138 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|254039030, gi....

Description	E-value	Query Range	Subject Range
gi\|56480444, gi\|... - gi\|56480444\|ref\|NP_709624.2\| hypothetical protein SF3896 [Shigella flexneri 2a str. 301], gi\|5638399... gi\|30064885, gi\|... - gi\|30064885\|ref\|NP_839056.1\| hypothetical protein S3859 [Shigella flexneri 2a str. 2457T], gi\|300431...	193.0	[0..1]	[138..1]
gi\|213979794 - gi\|213979794\|ref\|ZP_03407053.1\| hypothetical protein Salmonellaentericaenterica_36988 [Salmonella en... gi\|213852514 - gi\|213852514\|ref\|ZP_03382046.1\| hypothetical protein SentesT_06324 [Salmonella enterica subsp. enter... gi\|213649571 - gi\|213649571\|ref\|ZP_03379624.1\| hypothetical protein SentesTy_21042 [Salmonella enterica subsp. ente... gi\|213425416 - gi\|213425416\|ref\|ZP_03358166.1\| hypothetical protein SentesTyphi_06968 [Salmonella enterica subsp. e... lcl\|NC_016856.1_... - [gene=yigG] [protein=hypothetical protein] [protein_id=YP_005240215.1] [location=complement(4173261.... gi\|214002427 - gi\|214002427\|ref\|ZP_03413162.1\| hypothetical protein Salmonellentericaenterica_19456 [Salmonella ent... gi\|29143669, gi\|... - gi\|29143669\|ref\|NP_807011.1\| hypothetical protein t3343 [Salmonella enterica subsp. enterica serovar... gi\|16762180 - gi\|16762180\|ref\|NP_457797.1\| hypothetical protein STY3605 [Salmonella enterica subsp. enterica serov... gi\|16504483, gi\|... - gi\|25363784\|pir\|\|AD0918 conserved hypothetical protein STY3605 [imported] - Salmonella enterica subs... gi\|16422518, gi\|... - gi\|6960248\|gb\|AAF33438.1\| 58% identity with E. coli hypothetical protein (YIGG) (SP:P27843) [Salmone... gi\|213161542 - gi\|213161542\|ref\|ZP_03347252.1\| hypothetical protein Salmoneentericaenterica_16587 [Salmonella enter...	191.0	[0..7]	[136..19]
gi\|110617038, gi... - gi\|110807490\|ref\|YP_691010.1\| hypothetical protein SFV_3680 [Shigella flexneri 5 str. 8401], gi\|1106...	188.0	[0..1]	[138..1]
YIGG_ECOLI - Inner membrane protein yigG - Escherichia coli EG11465 - PRK11371 family inner membrane protein / Required for swarming phenotype, function unknown; inner me... gi\|170022160, gi... - gi\|170022160\|ref\|YP_001727114.1\| hypothetical protein EcolC_4190 [Escherichia coli ATCC 8739], gi\|16... gi\|170083299, gi... - gi\|170083299\|ref\|YP_001732619.1\| inner membrane protein [Escherichia coli str. K-12 substr. DH10B], ... gi\|188492144, gi... - gi\|188492144\|ref\|ZP_02999414.1\| inner membrane protein YigG [Escherichia coli 53638], gi\|188487343\|g... gi\|89110202, gi\|... - gi\|89110202\|ref\|AP_003982.1\| predicted inner membrane protein [Escherichia coli str. K-12 substr. W3... gi\|124530445, gi... - gi\|124530445\|ref\|ZP_01701103.1\| inner membrane protein [Escherichia coli B], gi\|124499211\|gb\|EAY4670... EG11465 - PRK11371 family inner membrane protein / Required for swarming phenotype, function unknown; inner me... gi\|238862525, gi... - gi\|238902893\|ref\|YP_002928689.1\| putative inner membrane protein [Escherichia coli BW2952], gi\|23886...	171.0	[0..13]	[138..1]

Back

Predicted Domain #1

Region A:
Residues: [1-138]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLTGDSYKDV KFMLRIFIPT SNGKISRRRY IFSFILINFI FAFLIIFFND GEAGFLVIVS  60
   61 TIVLHYLVIN MNCQRLRDSG FIYIKTYVFG TLAVYIISII TMIAEDFACS GNGSMIFLIC 120
  121 YFSTFSMLML APTDSSKQ

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.930	a.23.1	HSC20 (HSCB), C-terminal oligomerisation domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits