YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|254739550
Organism:	Bacillus anthracis str. Kruger B
Length:	622 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|254739550.

Description	E-value	Query Range	Subject Range
gi\|18144243, gi\|... - gi\|18309566\|ref\|NP_561500.1\| PTS system [Clostridium perfringens str. 13], gi\|18144243\|dbj\|BAB80290....	0.0	[1..621]	[1..625]
gi\|110674944, gi... - gi\|110800297\|ref\|YP_695018.1\| PTS system, fructose-specific, IIABC component [Clostridium perfringen...	0.0	[1..621]	[1..625]
gi\|110681997, gi... - gi\|110801496\|ref\|YP_697878.1\| fructose specific permease [Clostridium perfringens SM101], gi\|1106819...	0.0	[1..621]	[1..625]
gi\|51975240, gi\|... - gi\|52141771\|ref\|YP_085058.1\| PTS fructose-specific enzyme IIBC component [Bacillus cereus E33L], gi\|...	0.0	[1..622]	[1..619]
gi\|152976110, gi... - gi\|89202202\|ref\|ZP_01180931.1\| Phosphotransferase system PTS, fructose-specific IIB subunit:PTS syst...	0.0	[1..622]	[1..618]
gi\|52003251, gi\|... - gi\|52785415\|ref\|YP_091244.1\| hypothetical protein BLi01654 [Bacillus licheniformis ATCC 14580], gi\|5...	0.0	[1..621]	[1..627]
gi\|42738721, gi\|... - gi\|42782794\|ref\|NP_980041.1\| PTS system, fructose-specific IIABC component [Bacillus cereus ATCC 109...	0.0	[1..622]	[1..618]
gi\|49478953, gi\|... - gi\|49478953\|ref\|YP_037782.1\| PTS fructose-specific enzyme IIBC component [Bacillus thuringiensis ser...	0.0	[1..622]	[1..619]
gi\|22776518, gi\|... - gi\|23098293\|ref\|NP_691759.1\| PTS system fructose-specific enzyme II BC component [Oceanobacillus ihe...	0.0	[1..621]	[1..624]
gi\|65321042, gi\|... - gi\|65321042\|ref\|ZP_00394001.1\| COG1299: Phosphotransferase system, fructose-specific IIC component [...	0.0	[1..622]	[1..626]

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Predicted Domain #1

Region A:
Residues: [1-164]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKITELLKRD TVIMNLTASN KEAVIDELVE KLNGANRLNS KAEFKEAILK RESQSTTGIG  60
   61 EGIAIPHAKT KAVKQPAICF GRSVSGINYE SLDGQPAHLF FMIAASEGAN NTHLETLSRL 120
  121 STLLMDEGFR KQLLEAKDEE ELLRLFDEKE NEKENEKEEE VEVA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	29.221849
Match:	1a6jA
Description:	Nitrogen regulatory bacterial protein IIa-ntr
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
protein-N(PI)-phosphohistidine-sugar phosphotransferase activity	4.89047341597444	bayes_pls_golite062009
anion transmembrane transporter activity	4.24001113213235	bayes_pls_golite062009
inorganic anion transmembrane transporter activity	3.94111218055933	bayes_pls_golite062009
carbohydrate transmembrane transporter activity	3.92377913213665	bayes_pls_golite062009
substrate-specific transmembrane transporter activity	3.64568675122187	bayes_pls_golite062009
ion transmembrane transporter activity	2.5059397756077	bayes_pls_golite062009
transporter activity	2.16741930408232	bayes_pls_golite062009
bicarbonate transmembrane transporter activity	2.067679569708	bayes_pls_golite062009
transmembrane transporter activity	2.05879816720019	bayes_pls_golite062009
active transmembrane transporter activity	1.87457143976439	bayes_pls_golite062009
substrate-specific transporter activity	1.82451780056478	bayes_pls_golite062009
chloride transmembrane transporter activity	1.57532948941308	bayes_pls_golite062009
anion exchanger activity	1.57532948941308	bayes_pls_golite062009
anion:anion antiporter activity	1.07225541736305	bayes_pls_golite062009
transcription regulator activity	0.789390286938302	bayes_pls_golite062009
catalytic activity	0.547925219495929	bayes_pls_golite062009
binding	0.396676636991646	bayes_pls_golite062009
phosphotransferase activity, alcohol group as acceptor	0.19707628828681	bayes_pls_golite062009
cation transmembrane transporter activity	0.191423093908067	bayes_pls_golite062009

Predicted Domain #2

Region A:
Residues: [165-273]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QPEGNEPYVL AVTACPTGIA HTYMAADSLK AKAAELGIAI KVETNGSTGI KNGLTKEDIE  60
   61 RATAIIVAAD KQVEMNRFAG KHVIQVPVAD GIRKTEKLLN RAVKQDAPI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	21.69897
Match:	2r4qA
Description:	No description for 2r4qA was found.

Predicted Domain #3

Region A:
Residues: [274-443]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FKGIKEDGKT ESTEKEKGLG IYKHLMNGVS NMLPFVVGGG ILIALAFSFG GIKAEGPLAE  60
   61 LFMSIGGGGT GAFLFLVPIL AGFIASSIAD RPGFMPGVVG GFLAAHANAG FLGGLIAGFL 120
  121 AGYVVLGLKR LFSGLPVQLE GIKPVLLYPV FGLLITGVVM QKVVIPPVVA

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4

Region A:
Residues: [444-622]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LNEMLTGWLN GLNGTNAILL GLILGAMMAI DMGGPINKAA FTFGIAAIEA QNFGVHSAVM  60
   61 AGGMVPPLAI AFATTFFKSK FTEAERKSGL TNYIMGASFI TEGAIPFAAA DPVRVIVSCV 120
  121 VGSSIAGALS MLFQITLPAP HGGLFVIALV NKPVLYIFSI LIGAVVSALM MGIWKKKVK

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: