YRC Public Data Repository - Protein Structure Prediction

Protein:	GFA2_ARATH
Organism:	Arabidopsis thaliana
Length:	456 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GFA2_ARATH.

Description	E-value	Query Range	Subject Range
gi\|21429604 - gi\|21429604\|gb\|AAM49801.1\| GFA2 [Arabidopsis thaliana]	387.0	[0..1]	[456..1]
DNAJ_BURCE - Chaperone protein dnaJ - Burkholderia cepacia (Pseudomonas cepacia) DNAJ_BURML - (Q5NSW9) Chaperone protein dnaJ DNAJ_BURM1 - Chaperone protein DnaJ OS=Burkholderia multivorans (strain ATCC 17616 / 249) GN=dnaJ PE=3 SV=1	381.0	[0..90]	[455..1]
gi\|194564151, gi... - gi\|84360930\|ref\|ZP_00985617.1\| COG0484: DnaJ-class molecular chaperone with C-terminal Zn finger dom...	381.0	[0..90]	[455..1]
DNAJ_METFK - Chaperone protein DnaJ OS=Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) GN=dnaJ PE...	380.0	[0..90]	[455..1]
gi\|107103857 - gi\|107103857\|ref\|ZP_01367775.1\| hypothetical protein PaerPA_01004928 [Pseudomonas aeruginosa PACS2] DNAJ_PSEA8 - Chaperone protein DnaJ OS=Pseudomonas aeruginosa (strain LESB58) GN=dnaJ PE=3 SV=1 DNAJ_PSEAE - Chaperone protein dnaJ OS=Pseudomonas aeruginosa GN=dnaJ PE=3 SV=1 DNAJ_PSEAB - Chaperone protein DnaJ OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=dnaJ PE=3 SV=1 DNAJ_PSEAE - Chaperone protein DnaJ OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 1222... gi\|194549490, gi... - gi\|84317360\|ref\|ZP_00965808.1\| COG0484: DnaJ-class molecular chaperone with C-terminal Zn finger dom... gi\|126197717, gi... - gi\|84323584\|ref\|ZP_00971653.1\| COG0484: DnaJ-class molecular chaperone with C-terminal Zn finger dom...	378.0	[0..90]	[451..1]
gi\|82703356, gi\|... - gi\|82703356\|ref\|YP_412922.1\| heat shock protein DnaJ [Nitrosospira multiformis ATCC 25196], gi\|82411...	377.0	[0..88]	[455..8]
DNAJ_PSEA7 - Chaperone protein DnaJ OS=Pseudomonas aeruginosa (strain PA7) GN=dnaJ PE=3 SV=1	376.0	[0..90]	[451..1]
gi\|167721070 - gi\|167721070\|ref\|ZP_02404306.1\| chaperone protein DnaJ [Burkholderia pseudomallei DM98] gi\|167817260 - gi\|167817260\|ref\|ZP_02448940.1\| chaperone protein DnaJ [Burkholderia pseudomallei 91] DNAJ_BURPS - Chaperone protein DnaJ OS=Burkholderia pseudomallei GN=dnaJ PE=3 SV=1 gi\|167895740 - gi\|167895740\|ref\|ZP_02483142.1\| chaperone protein DnaJ [Burkholderia pseudomallei 7894] gi\|167904131 - gi\|167904131\|ref\|ZP_02491336.1\| chaperone protein DnaJ [Burkholderia pseudomallei NCTC 13177] gi\|167825671 - gi\|167825671\|ref\|ZP_02457142.1\| chaperone protein DnaJ [Burkholderia pseudomallei 9] gi\|167847158 - gi\|167847158\|ref\|ZP_02472666.1\| chaperone protein DnaJ [Burkholderia pseudomallei B7210] DNAJ_BURP1 - Chaperone protein DnaJ OS=Burkholderia pseudomallei (strain 1710b) GN=dnaJ PE=3 SV=1 gi\|194569444, gi... - gi\|83680877\|ref\|ZP_00942581.1\| COG0484: DnaJ-class molecular chaperone with C-terminal Zn finger dom... gi\|67674194, gi\|... - gi\|99913736\|ref\|ZP_01320333.1\| hypothetical protein Bpse1_03000024 [Burkholderia pseudomallei 1655],... gi\|90295004, gi\|... - gi\|90295004\|ref\|ZP_01214595.1\| hypothetical protein Bpse17_02000492 [Burkholderia pseudomallei 1710a... gi\|254191597, gi... - gi\|67757438\|ref\|ZP_00496314.1\| COG0484: DnaJ-class molecular chaperone with C-terminal Zn finger dom... gi\|167912391 - gi\|167912391\|ref\|ZP_02499482.1\| chaperone protein DnaJ [Burkholderia pseudomallei 112] gi\|217395826, gi... - gi\|217420414\|ref\|ZP_03451919.1\| chaperone protein DnaJ [Burkholderia pseudomallei 576], gi\|217395826... DNAJ_BURPS - Chaperone protein DnaJ OS=Burkholderia pseudomallei (strain K96243) GN=dnaJ PE=3 SV=1 gi\|226194162, gi... - gi\|226194162\|ref\|ZP_03789761.1\| chaperone protein DnaJ [Burkholderia pseudomallei Pakistan 9], gi\|22...	376.0	[0..90]	[455..1]
gi\|254194930, gi... - gi\|67761333\|ref\|ZP_00500043.1\| COG0484: DnaJ-class molecular chaperone with C-terminal Zn finger dom... gi\|134248167, gi... - gi\|134280160\|ref\|ZP_01766871.1\| chaperone protein DnaJ [Burkholderia pseudomallei 305], gi\|134248167... gi\|167740044 - gi\|167740044\|ref\|ZP_02412818.1\| chaperone protein DnaJ [Burkholderia pseudomallei 14] DNAJ_BURP0 - Chaperone protein DnaJ OS=Burkholderia pseudomallei (strain 1106a) GN=dnaJ PE=3 SV=1 gi\|167920345 - gi\|167920345\|ref\|ZP_02507436.1\| chaperone protein DnaJ [Burkholderia pseudomallei BCC215] gi\|242139778, gi... - gi\|82538618\|ref\|ZP_00897611.1\| hypothetical protein Bpse110_02000313 [Burkholderia pseudomallei 1106... DNAJ_BURP6 - Chaperone protein DnaJ OS=Burkholderia pseudomallei (strain 668) GN=dnaJ PE=3 SV=1 gi\|237813677, gi... - gi\|237813677\|ref\|YP_002898128.1\| chaperone protein DnaJ [Burkholderia pseudomallei MSHR346], gi\|2375...	376.0	[0..90]	[455..1]

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Predicted Domain #1

Region A:
Residues: [1-76]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVPSNGAKVL RLLSRRCLSS SLIQDLANQK LRGVCIGSYR RLNTSVGNHA NVIGDYASKS  60
   61 GHDRKWINFG GFNTNF

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.606	N/A	N/A	d.50.3	PI-Pfui intein middle domain
View	Download	0.572	N/A	N/A	a.29.8	Description not found.
View	Download	0.561	N/A	N/A	d.50.3	PI-Pfui intein middle domain
View	Download	0.523	N/A	N/A	d.50.3	PI-Pfui intein middle domain
View	Download	0.519	N/A	N/A	d.50.3	PI-Pfui intein middle domain
View	Download	0.502	N/A	N/A	d.50.3	PI-Pfui intein middle domain
View	Download	0.458	N/A	N/A	a.4.5	"Winged helix" DNA-binding domain
View	Download	0.452	N/A	N/A	d.15.2	CAD & PB1 domains
View	Download	0.435	N/A	N/A	b.1.3	PKD domain
View	Download	0.407	N/A	N/A	a.60.5	Barrier-to-autointegration factor, BAF
View	Download	0.305	N/A	N/A	a.74.1	Cyclin-like
View	Download	0.237	N/A	N/A	a.16.1	S15/NS1 RNA-binding domain
View	Download	0.220	N/A	N/A	a.100.1	6-phosphogluconate dehydrogenase C-terminal domain-like

Predicted Domain #2

Region A:
Residues: [77-180]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GSTRSFHGTG SSFMSAKDYY SVLGVSKNAQ EGEIKKAYYG LAKKLHPDMN KDDPEAETKF  60
   61 QEVSKAYEIL KDKEKRDLYD QVGHEAFEQN ASGGFPNDQG FGGG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	23.30103
Match:	1bq0A
Description:	J-DOMAIN (RESIDUES 1-77) OF THE ESCHERICHIA COLI N-TERMINAL FRAGMENT (RESIDUES 1-104) OF THE MOLECULAR CHAPERONE DNAJ, NMR, 20 STRUCTURES
Matching Structure (courtesy of the PDB):

Predicted Domain #3

Region A:
Residues: [181-456]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GGGGFNPFDI FGSFNGDIFN MYRQDIGGQD VKVLLDLSFM EAVQGCSKTV TFQTEMACNT  60
   61 CGGQGVPPGT KREKCKACNG SGMTSLRRGM LSIQTTCQKC GGAGQTFSSI CKSCRGARVV 120
  121 RGQKSVKVTI DPGVDNSDTL KVARVGGADP EGDQPGDLYV TLKVREDPVF RREGSDIHVD 180
  181 AVLSVTQAIL GGTIQVPTLT GDVVVKVRPG TQPGHKVVLR NKGIRARKST KFGDQYVHFN 240
  241 VSIPANITQR QRELLEEFSK AEQGEYEQRT ATGSSQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	41.69897
Match:	1nltA
Description:	The crystal structure of Hsp40 Ydj1
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits