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View Structure Prediction Details

Protein: COX11_ARATH
Organism: Arabidopsis thaliana
Length: 287 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for COX11_ARATH.

Description E-value Query
Range
Subject
Range
gi|9857538, gi|2... - gi|9857538|gb|AAG00893.1|AC064879_11 Similar to cytochrome-c oxidase assembly protein [Arabidopsis ...
335.0 [0..72] [287..1]

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Predicted Domain #1
Region A:
Residues: [1-287]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSWSKACRGT RISSYLENLH RTSQYPRTIL CSRYYTHGAC KSNEHYLRSK RVFWGSSSSW  60
   61 SLNSHSATAK SMLDSAHRQY STHSPSETKS QKMLYYLTAV VFGMVGLTYA AVPLYRTFCQ 120
  121 ATGYGGTVQR KETVEEKIAR HSESGTVTER EIVVQFNADV ADGMQWKFTP TQREVRVKPG 180
  181 ESALAFYTAE NKSSAPITGV STYNVTPMKA GVYFNKIQCF CFEEQRLLPG EQIDMPVFFY 240
  241 IDPEFETDPR MDGINNLILS YTFFKVSEEN TTETVNNNNS VPVQETN

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 66.154902
Match: 1so9A
Description: Solution Structure of apoCox11, 30 structures
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 1.26238051646126 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle