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View Structure Prediction Details

Protein: CSTR3_ARATH
Organism: Arabidopsis thaliana
Length: 405 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CSTR3_ARATH.

Description E-value Query
Range
Subject
Range
CSTR5_ORYSJ - CMP-sialic acid transporter 5 OS=Oryza sativa subsp. japonica GN=CSTLP5 PE=2 SV=1
187.0 [0..2] [404..3]

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Predicted Domain #1
Region A:
Residues: [1-101]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKNGIAECPA CHSKLVSPGS KTISRAYDDH KIRVSSKQRV LNVLLVVGDC MLVGLQPVLV  60
   61 YMSKVDGKFN FSPISVNFLT EIAKVIFAIV MLLIQARHQK V

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [102-274]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GEKPLLSVST FVQAARNNVL LAVPALLYAI NNYLKFTMQL YFNPATVKML SNLKVLVIAV  60
   61 LLKMVMKRRF SIIQWEALAL LLIGISVNQL RSLPEGATAI GIPLATGAYV CTVIFVTVPS 120
  121 MASVFNEYAL KSQYDTSIYL QNLFLYGYGA IFNFLGILGT VIYKGPGSFD ILQ

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 2.09
Match: 2i68A
Description: No description for 2i68A was found.

Predicted Domain #3
Region A:
Residues: [275-405]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GHSRATMFLI LNNAAQGILS SFFFKYADTI LKKYSSTVAT IFTGIASAAL FGHVITMNFL  60
   61 LGISIVFISM HQFFSPLAKA RDEQQQNGNL ELGNTKDTHR ANESFINMAA GANEEASHRG 120
  121 ESDDRTPLLP R

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


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Created and Maintained by: Michael Riffle