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View Structure Prediction Details

Protein: RBL6_ARATH
Organism: Arabidopsis thaliana
Length: 307 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RBL6_ARATH.

Description E-value Query
Range
Subject
Range
gi|25402744, gi|... - gi|9502383|gb|AAF88090.1|AC025417_18 T12C24.28 [Arabidopsis thaliana], pir||G86260 protein T12C24.28...
239.0 [0..6] [307..1]

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Predicted Domain #1
Region A:
Residues: [1-245]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRSRDMERGR KHRGDTQWTA WLTPTIVVAN VSIFIVVMYT NDCPKTTTGA NGDCVAKLLR  60
   61 RFSFQPLREN PFLGPSSSTL EKLGALDWKK VVQGNEKWRL ITAMWLHAGI IHLVMNMFDV 120
  121 IIFGIRLEQQ FGFIRIGLIY LISGFGGSIL SALFLQKSIS VGASGALLGL MGAMLSELLT 180
  181 NWTIYKSKLC ALLSFLFIIA INLAIGLLPW VDNFAHIGGL LTGFCLGFIL LMQPQSGWEE 240
  241 FRNSS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 18.221849
Match: 2nr9A
Description: No description for 2nr9A was found.

Predicted functions:

Term Confidence Notes
catalytic activity 0.015349122465922 bayes_pls_golite062009

Predicted Domain #2
Region A:
Residues: [246-307]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QYGARARSKY NPCQYVLFFV AAVLVVAGLT VGLVMLFDGE NGNKHCKWCH RLDCYPTSKW  60
   61 SC

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
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