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View Structure Prediction Details

Protein: gi|22136914, gi|...
Organism: Arabidopsis thaliana
Length: 521 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|22136914, gi|....

Description E-value Query
Range
Subject
Range
gi|110741177 - gi|110741177|dbj|BAF02139.1| hypothetical protein [Arabidopsis thaliana]
767.0 [0..1] [521..1]
gi|92876972 - gi|92876972|gb|ABE84237.1| conserved hypothetical protein [Medicago truncatula]
650.0 [0..2] [521..3]
gi|108862482 - gi|108862482|gb|ABA97463.2| expressed protein [Oryza sativa (japonica cultivar-group)]
gi|125536309 - gi|125536309|gb|EAY82797.1| hypothetical protein OsI_38003 [Oryza sativa Indica Group]
510.0 [0..161] [504..76]
gi|116310947, gi... - gi|125549075|gb|EAY94897.1| hypothetical protein OsI_16697 [Oryza sativa Indica Group], gi|116310947...
369.0 [0..178] [444..119]

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Predicted Domain #1
Region A:
Residues: [1-172]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSHMVFQSVV APKPLSPLKP CLPIPRPLVT LPCKLRRGFV RASSSSFLVD DSVSGLERCL  60
   61 QLPSGVELGT SSSGSFSAST QMCPVMKGKF GSVGAVTLEK GKLDMTQKIS ETSPEIATGG 120
  121 GGGNIGKSIN NGGGDGGDDN GDDDDYFDEF DDGDEGDDDG LFRRRMFLAE IF

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [173-271]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DRKFVDAVLN EWQKTMMDLP AGLRQAYEMG LVSSAQMVKF LAINARPTTT RMISRALPQG  60
   61 LSRAFVGRML ADPAFLYKLL LEQAATVGCS VWWEVKNRK

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.915 N/A N/A a.24.10 Histidine-containing phosphotransfer domain, HPT domain

Predicted Domain #3
Region A:
Residues: [272-521]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NRLKEEWDLA LINVLTVSAC NAAAVWLLAP CRSYGNTFRF DLQNTLQKLP NNLFEMSYPL  60
   61 REFDLQKRFH SLFYKAAELS ILGLAAGTLQ GSLSNVLAGK KKNRVSVTVP SISTNALGYG 120
  121 AFLGIYANLR YQLLCGFERG VSSHFDVIGV ALFFGTALRI MNVQLGEKSR QVWLGVEADP 180
  181 LAQSDDLLAK AYNRPSEEAV AKPSSKWFIS KNAIVSGLLG KKQEDSVSDS PPPKARRKRI 240
  241 VRKKVAASAS 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle