YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: ENDO3_ARATH
Organism: Arabidopsis thaliana
Length: 294 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ENDO3_ARATH.

Description E-value Query
Range
Subject
Range
ENDO4_ARATH - Endonuclease 4 OS=Arabidopsis thaliana GN=ENDO4 PE=3 SV=1
444.0 [0..1] [292..1]

Back

Predicted Domain #1
Region A:
Residues: [1-294]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGWSLRMWIV SILVLTQLVN GALCWGDAGH YAVCKIAQSY FEEDTVVAVK KLLPESANGE  60
   61 LAAVCSWPDE IKKLPQWRWT SALHFADTPD YKCNYEYSRD CPKDWCVTGA IFNYTNQLMS 120
  121 TSENSQSIVH YNLTEALMFL SHYMGDIHQP LHEGFIGDLG GNKIKVHWYN QETNLHRVWD 180
  181 DMIIESALET YYNSSLPRMI HELQAKLKNG WSNDVPSWES CQLNQTACPN PYASESIDLA 240
  241 CKYAYRNATA GTTLGDYYFV SRLPVVEKRL AQGGIRLAGT LNRIFSAKRK LARA

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 64.221849
Match: 1ak0A
Description: P1 NUCLEASE IN COMPLEX WITH A SUBSTRATE ANALOG
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 0.237569247811196 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle