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View Structure Prediction Details

Protein: gi|18411179, gi|...
Organism: Arabidopsis thaliana
Length: 251 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|18411179, gi|....

Description E-value Query
Range
Subject
Range
gi|6996283, gi|1... - gi|6996283|emb|CAB75444.1| putative protein [Arabidopsis thaliana], pir||T49288 hypothetical protein...
202.0 [0..3] [251..1]
gi|92867363 - gi|92867363|gb|ABE77675.1| Ovarian tumour, otubain [Medicago truncatula]
176.0 [0..13] [248..1]
gi|113549913, gi... - gi|115455683|ref|NP_001051442.1| Os03g0777700 [Oryza sativa (japonica cultivar-group)], gi|113549913...
167.0 [0..44] [247..1]

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Predicted Domain #1
Region A:
Residues: [1-106]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMMGIPVELE VTTVENHNEM GESSGQAMIE QDDDNHNELG ENSGEQDEKV DLDSIPLAVA  60
   61 DMTEAQGDEP YVGQEFESEA AAHGFYNAYA TKVGFVIRVS KLSRSR

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.401 N/A N/A a.165.1 Myosin phosphatase inhibitor 17kDa protein, CPI-17
View Download 0.333 N/A N/A d.129.2 Phosphoglucomutase, C-terminal domain
View Download 0.315 N/A N/A c.37.1 P-loop containing nucleoside triphosphate hydrolases
View Download 0.315 N/A N/A c.37.1 P-loop containing nucleoside triphosphate hydrolases
View Download 0.297 N/A N/A c.46.1 Rhodanese/Cell cycle control phosphatase
View Download 0.295 N/A N/A d.16.1 FAD-linked reductases, C-terminal domain
View Download 0.278 N/A N/A a.2.3 Chaperone J-domain
View Download 0.225 N/A N/A d.93.1 SH2 domain
View Download 0.220 N/A N/A a.39.2 Insect pheromon/odorant-binding proteins
View Download 0.212 N/A N/A a.228.1 Description not found.
View Download 0.212 N/A N/A d.45.1 ClpS-like
View Download 0.212 N/A N/A d.45.1 ClpS-like
View Download 0.203 N/A N/A c.59.1 MurD-like peptide ligases, peptide-binding domain

Predicted Domain #2
Region A:
Residues: [107-183]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HDGSPIGRQL VCNKEGYRLP SKRDKVIRQR AETRVGCKAM ILIRKENSGK WVITKFVKEH  60
   61 NHSLMPGRVR RGCIYDQ

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 0.952
Match: 2aydA
Description: No description for 2aydA was found.

Predicted Domain #3
Region A:
Residues: [184-251]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YPNEHDKIQE LMQQLAAEKK RAATYKRHLE MLFEQIEQHN ESLSKRIQHI VDNVRNLEQR  60
   61 DHQQNHQV

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle