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View Structure Prediction Details

Protein: gi|15028307, gi|...
Organism: Arabidopsis thaliana
Length: 437 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15028307, gi|....

Description E-value Query
Range
Subject
Range
gi|22655008, gi|... - gi|22655008|gb|AAM98095.1| AT3g20300/MQC12_5 [Arabidopsis thaliana], gi|21537221|gb|AAM61562.1| unkn...
623.0 [0..5] [433..20]

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Predicted Domain #1
Region A:
Residues: [1-76]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATNGSSEHL LPETTRPSAI INKQQPEFPA SRFTFMSLVL WFDQSNFGTA LLSWSVFFLL  60
   61 VVIVPLISHF LLVCSD

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [77-290]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 CDFHHRRPYD VIVQLSLSIF AGISFVSLSI WSRKFGMRRF LFLDKLWDVS DKVRIEYEAE  60
   61 IQRSLKRLMI FVLPSLTLEA TYRIWWYISG FNQIPYIINP ILSHVVACTL QLSSWLYRNS 120
  121 LFIIVCILYK ITCHLQTLRL DDFARCFASE ITDVRSALGE HQKIRRNLRI VSHRFRRFIL 180
  181 LSLILVTATQ FMALLTTTRA SVAVNIYEVG ELAL

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [291-437]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 CSLSLVTGVF ICLRSATKIT HKAQSVTSLA AKWNVCATVD SFDHLDGETP TGSIIESQVS  60
   61 LRGNAIETSD DEEGEGDDDL DNTKIHPIYA NTISYQKRQA LVTYLENNKA GITVYGFLVD 120
  121 RSWLNTIFGI ELALLLWLLN KTIVNIP

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle