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View Structure Prediction Details

Protein: gi|16805191, gi|...
Organism: Plasmodium falciparum 3D7
Length: 1294 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|16805191, gi|....

Description E-value Query
Range
Subject
Range
gi|124505617, gi... - gi|23510226|ref|NP_702892.1| Plasmodium falciparum trophozoite antigen r45-like protein [Plasmodium ...
332.0 [0..532] [1217..204]
gi|78223250, gi|... - gi|78223250|ref|YP_384997.1| hypothetical protein Gmet_2043 [Geobacter metallireducens GS-15], gi|78...
283.0 [0..710] [1249..1652]
gi|56498946 - gi|56498946|emb|CAI00673.1| conserved hypothetical protein [Plasmodium berghei]
gi|68073107 - gi|68073107|ref|XP_678468.1| hypothetical protein [Plasmodium berghei strain ANKA]
269.0 [0..1] [723..1]
CRAM_TRYBB - Cysteine-rich, acidic integral membrane protein OS=Trypanosoma brucei brucei GN=CRAM PE=2 SV=1
262.0 [0..541] [1215..108]
gi|71747796 - gi|71747796|ref|XP_822953.1| cysteine-rich acidic integral membrane protein precursor [Trypanosoma b...
gi|70832621 - gi|70832621|gb|EAN78125.1| cysteine-rich, acidic integral membrane protein precursor [Trypanosoma br...
257.0 [0..541] [1216..299]
gi|56526168 - gi|56526168|emb|CAH78856.1| conserved hypothetical protein [Plasmodium chabaudi chabaudi]
gi|70953273 - gi|70953273|ref|XP_745748.1| hypothetical protein [Plasmodium chabaudi chabaudi]
256.0 [0..1] [951..1]

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Predicted Domain #1
Region A:
Residues: [1-173]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKVGIIFFCL FFFVVLGACN NVKERIFKNI KKRTKFIILN EPIVDLSFSE NLFHTLLFDL  60
   61 DVDKNLYTLD ESLLNLENLN YSSIFRLLVD TYKNIKENED DNKNIRYIFL GTSFSRIHPL 120
  121 NFEYFLRKLN KYIYNGNIYE KGNVDIRGIL EEYNKEIEEK KLEKQKLNKI KDK

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [174-377]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NNNNNNNNNS KFSKDGDNED FNNKNDLYNP SDKLYNNNDD IDVHELLEEI ITKEKRFFLN  60
   61 DDDDNDSNDK YILKTDEVNK YKGFFIGYGF NDDIPSVIHH YNFDKNFLFP SLNSGIILDI 120
  121 TLLKNIYEVS NILLSNNEKD QSIHIDYIYE VTKYIKENLR VRLTHSENVC LNEEQNIHLL 180
  181 DNDPNNFEIY KYYQVLNLFK DYNK

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [378-513]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NTEEKQYEKI GHENVRHEET SSEGNENLNR NTKHNNDNNN DNNNYSEDAI AELLLSYFNV  60
   61 FYPISTCMCY SIRSKHESLM DYDKYHMINL ENDIKLKHYI KETEEIHFNS IEEYKMKLNR 120
  121 INYKYDTLLE EHENLV

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [514-874]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 THKNILIGIK TSINTEEERI PHIKNTYDNK ENTQIIFNTF NYDNKLKEKN TFGFYNNSLL  60
   61 QNALENDNID LDIIYMSDKE SQKYDNLYFN SKVTSKEGLC EKLKHMIYYY YEEYVMKNSE 120
  121 KKYFFIADDD TFVNVKNLID VTNLTLNTCS HSKKYMYDKY IKSYDFVKEN EALFLQNFPK 180
  181 KTLFLYSYLK DTFAKTIQTL KKYDYVPKYC QGGILSKKHK NNDSDDDHDH HVGNKQNNDS 240
  241 TNHQDIEKNQ VNVINNNNNN NNNKAKSIPI YLGRRYSYNT FSTNSNEYFY DYLTGGAGIL 300
  301 INDETAKRIY ECKECTCPST NSSMDDMIFG KWAKELGILA INFEGYFQNS PLDYNKKYIN 360
  361 T

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 0.979
Match: 2j0aA
Description: No description for 2j0aA was found.

Predicted Domain #5
Region A:
Residues: [875-981]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LVPITYHRLN KNRTTKESRD MYFNYLVNYN RNDKEQNKDI YVDYLDRNHK NMIDNVFHYF  60
   61 FYVNMYDEKN KVVTKIEHNA DMNSKKNKSK NPQKLNNTQG DKNVNDD

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #6
Region A:
Residues: [982-1208]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ENVNDDENVK GDENVKGDEN VKGDEYMKGD ENVKGDENVK DDENVKDDEN IKGDDNNYNV  60
   61 DNMENIDDII NMVESVDDDV MERNKKGTGK EKKDDKNHNN KEKATDVKKS SVPTNNIDKN 120
  121 EDTTKYVIKM NEKIYNRMQE SGKYKQLFDI NKFFKKEIEG HPYFQKIKKK NEKAKKEKEK 180
  181 MNQLKKQKDY TNNYFHTSNM QGNFNQQKMG NYQNQENEEN DFFDQRP

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #7
Region A:
Residues: [1209-1294]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EIEEDAINPM DYEEYMENLS NFEDDGEPYD EYDDYDDFVN TINADKLKIN DQNKHLYEQI  60
   61 KDIAQPPVNF QNDQNSNTFD FDTDEL

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle