YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: gi|112360043, gi...
Organism: Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819
Length: 263 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|112360043, gi....

Description E-value Query
Range
Subject
Range
gi|89211345, gi|... - gi|89211345|ref|ZP_01189714.1| Protein of unknown function DUF1078 [Halothermothrix orenii H 168], g...
267.0 [0..1] [263..1]
gi|4982109, gi|1... - gi|4982109|gb|AAD36609.1|AE001800_19 flagellar basal-body rod protein FlgG [Thermotoga maritima MSB8...
gi|7443089 - pir||B72243 flagellar basal-body rod protein FlgG - Thermotoga maritima (strain MSB8)
gi|119886237, gi... - gi|148270380|ref|YP_001244840.1| flagellar basal-body rod protein FlgG [Thermotoga petrophila RKU-1]...
261.0 [0..1] [263..1]
gi|7443088 - pir||C70372 flagellar hook basal body protein flgG - Aquifex aeolicus
gi|15606190, gi|... - gi|2983377|gb|AAC06963.1| flagellar hook basal-body protein FlgG [Aquifex aeolicus VF5], gi|15606190...
261.0 [0..1] [263..1]
gi|58582198, gi|... - gi|58582198|ref|YP_201214.1| flagellar biosynthesis cell-distal portion of basal-body rod [Xanthomon...
257.0 [0..1] [260..81]
gi|67677244, gi|... - gi|92114096|ref|YP_574024.1| flagellar basal-body rod FlgG [Chromohalobacter salexigens DSM 3043], g...
256.0 [0..1] [261..1]
gi|71484066, gi|... - gi|71550721|ref|ZP_00670810.1| Flagellar basal body rod protein:Protein of unknown function DUF1078 ...
255.0 [0..1] [261..1]
gi|86157777, gi|... - gi|86157777|ref|YP_464562.1| flagellar basal-body rod FlgG [Anaeromyxobacter dehalogenans 2CP-C], gi...
252.0 [0..2] [262..7]
gi|57505521, gi|... - gi|57505521|ref|ZP_00371448.1| flagellar basal-body rod protein (flgG) [Campylobacter upsaliensis RM...
251.0 [0..1] [263..1]
gi|34558104 - gi|34558104|ref|NP_907919.1| flagellar basal body rod protein FlgG [Wolinella succinogenes DSM 1740]
gi|34483822 - gi|34483822|emb|CAE10819.1| FLAGELLAR BASAL-BODY ROD PROTEIN DISTAL ROD PROTEIN [Wolinella succinoge...
251.0 [0..1] [263..1]
gi|189018758, gi... - gi|189026183|ref|YP_001933955.1| flagellar basal-body rod protein [Treponema pallidum subsp. pallidu...
gi|15639944, gi|... - gi|3323281|gb|AAC65915.1| flagellar basal-body rod protein (flgG-1) [Treponema pallidum subsp. palli...
gi|7443084 - pir||C71259 probable flagellar basal-body rod protein (flgG-1) - syphilis spirochete
251.0 [0..1] [263..1]

Back

Predicted Domain #1
Region A:
Residues: [1-90]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMRSLHTAAT GMVAQQTQID VTSNNIANVN TAGFKKSRAE FADLMYQVMK YAGTSTSATT  60
   61 LSPSGIEVGV GVRPTAVTKV FTEGNLKSTS 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.635 N/A N/A a.74.1 Cyclin-like
View Download 0.504 N/A N/A a.74.1 Cyclin-like
View Download 0.479 N/A N/A a.74.1 Cyclin-like
View Download 0.464 N/A N/A a.4.5 "Winged helix" DNA-binding domain
View Download 0.461 N/A N/A a.77.1 DEATH domain

Predicted Domain #2
Region A:
Residues: [91-263]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TDGLDMAIAG NGFFQIQLPD GTIGYTRNGQ FTKDNEGNIV NSDGYRLLPE MTIPEGATAI  60
   61 NVATDGTVSV MLPGEQQETQ IGQVELVQFI NPAGLHSMGD NLYLETGASG APVAGIAGQD 120
  121 GLGTIRHGFI ELSNVQLVEE MTDLITGQRA YEAGSKAITT SDDMLGIVNQ LKR

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 7.045757
Match: 1wlgA
Description: Crystal structure of FlgE31, a major fragment of the hook protein
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle