YRC Public Data Repository - Protein Structure Prediction

Protein:	Y1541_CAMJE
Organism:	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819
Length:	255 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Y1541_CAMJE.

Description	E-value	Query Range	Subject Range
Y993_PYRAB - UPF0271 protein PYRAB09930 OS=Pyrococcus abyssi GN=PYRAB09930 PE=3 SV=1 Y993_PYRAB - UPF0271 protein PYRAB09930 OS=Pyrococcus abyssi (strain GE5 / Orsay) GN=PYRAB09930 PE=3 SV=1	418.0	[0..2]	[255..1]
Y986_PYRHO - UPF0271 protein PH0986 OS=Pyrococcus horikoshii GN=PH0986 PE=1 SV=1 Y986_PYRHO - UPF0271 protein PH0986 OS=Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 10...	414.0	[0..2]	[255..1]
YC72_PYRFU, Y127... - (Q8U1D7) Hypothetical UPF0271 protein PF1272, UPF0271 protein PF1272 OS=Pyrococcus furiosus GN=PF127... Y1272_PYRFU - UPF0271 protein PF1272 OS=Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=PF1...	408.0	[0..2]	[255..1]
Y336_THEKO - UPF0271 protein TK0336 OS=Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1) GN=TK03... Y336_PYRKO - UPF0271 protein TK0336 OS=Pyrococcus kodakaraensis GN=TK0336 PE=3 SV=1	399.0	[0..2]	[255..1]
Y1899_CAMJD - UPF0271 protein JJD26997_1899 OS=Campylobacter jejuni subsp. doylei (strain ATCC BAA-1458 / RM4099 /...	398.0	[0..1]	[255..1]
gi\|86152810, gi\|... - gi\|86152810\|ref\|ZP_01071015.1\| LamB/YcsF [Campylobacter jejuni subsp. jejuni HB93-13], gi\|85843695\|g...	398.0	[0..1]	[255..1]
Y1712_CAMJR - UPF0271 protein CJE1712 OS=Campylobacter jejuni (strain RM1221) GN=CJE1712 PE=3 SV=1 gi\|205356626, gi... - gi\|205356626\|ref\|ZP_03223388.1\| hypothetical protein Cj8421_1591 [Campylobacter jejuni subsp. jejuni...	398.0	[0..1]	[255..1]
Y3119_BACC1 - UPF0271 protein BCE_3119 OS=Bacillus cereus (strain ATCC 10987 / NRS 248) GN=BCE_3119 PE=3 SV=1	397.0	[0..1]	[250..1]
Y2847_BACHK - UPF0271 protein BT9727_2847 OS=Bacillus thuringiensis subsp. konkukian GN=BT9727_2847 PE=3 SV=1 Y2847_BACHK - UPF0271 protein BT9727_2847 OS=Bacillus thuringiensis subsp. konkukian (strain 97-27) GN=BT9727_2847...	397.0	[0..1]	[250..1]
gi\|85840987, gi\|... - gi\|86151879\|ref\|ZP_01070092.1\| LamB/YcsF family protein [Campylobacter jejuni subsp. jejuni 260.94],...	395.0	[0..1]	[255..1]

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Predicted Domain #1

Region A:
Residues: [1-255]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFKVDLNSDL GESFGAYKMG MDEEILKFVS SVNVACGFHA GDPCVMDETL NLAKQNGVCI  60
   61 GAHPSYPDLL GFGRRNMQIS FEEAKNYALY QLGALFGFAK AKGMKIQHFK AHGALYNMAA 120
  121 IDENLALALC EAVASFDENI IFLGLSNSAM NEAAKKKGLR YANEVFADRA YNDDGTLVSR 180
  181 KLEGALIHDE NLAIKRVIKM IKESKVTSIN GKEIDLKADS ICVHGDNAKA LEFVKKIKEN 240
  241 LKKEQIQICA LENFI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	116.0
Match:	1v6tA
Description:	Crystal Structure of Lactam Utilization Protein from Pyrococcus horikoshii Ot3
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.412391974836	bayes_pls_golite062009
hydrolase activity	0.333866445066122	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: