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View Structure Prediction Details

Protein: RL183_ARATH
Organism: Arabidopsis thaliana
Length: 187 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RL183_ARATH.

Description E-value Query
Range
Subject
Range
gi|108708066, gi... - gi|222624903|gb|EEE59035.1| hypothetical protein OsJ_10788 [Oryza sativa Japonica Group], gi|1154529...
gi|218192805 - gi|218192805|gb|EEC75232.1| hypothetical protein OsI_11506 [Oryza sativa Indica Group]
299.0 [0..1] [187..1]

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Predicted Domain #1
Region A:
Residues: [1-141]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGIDLIAGGK SKKTKRTAPK SDDVYLKLLV KLYRFLVRRS NSNFNAVILK RLFMSKVNKA  60
   61 PLSLSRLVEF MTGKDDKIAV LVGTITDDLR VHEIPAMKVT ALRFTERARA RIEKAGGECL 120
  121 TFDQLALRAP LGQNTVLLRG P

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 39.0
Match: 1s1iO
Description: Structure of the ribosomal 80S-eEF2-sordarin complex from yeast obtained by docking atomic models for RNA and protein components into a 11.7 A cryo-EM map. This file, 1S1I, Contains 60S subunit. The 40S Ribosomal Subunit Is In File 1S1H.
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [142-187]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KNSREAVKHF GPAPGVPHSN TKPYVRHKGR KFEKARGKRK SRGFKV

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle