YRC Public Data Repository - Protein Structure Prediction

Protein:	BAG4_ARATH
Organism:	Arabidopsis thaliana
Length:	269 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for BAG4_ARATH.

Description	E-value	Query Range	Subject Range
gi\|116060737 - gi\|116060737\|emb\|CAL57215.1\| polyubiquitin (ISS) [Ostreococcus tauri]	204.0	[0..17]	[259..23]
gi\|114647760 - gi\|114647760\|ref\|XP_001136911.1\| PREDICTED: hypothetical protein [Pan troglodytes]	203.0	[0..17]	[251..118]
gi\|7488781, gi\|1... - pir\|\|T12035 polyubiquitin 4.4 - kidney bean, gi\|1684855\|gb\|AAB36545.1\| ubiquitin-like protein [Phase...	202.0	[0..17]	[248..149]
gi\|50756309 - gi\|50756309\|ref\|XP_415105.1\| PREDICTED: similar to polyubiquitin with 3 Ub domains [Gallus gallus]	202.0	[0..48]	[251..171]
gi\|18412930, gi\|... - gi\|30680056\|ref\|NP_849300.1\| UBQ10 (POLYUBIQUITIN 10); protein binding [Arabidopsis thaliana], gi\|18...	201.0	[0..17]	[248..47]
gi\|19698785 - gi\|19698785\|gb\|AAL91103.1\| ubiquitin [Acanthocheilonema viteae]	199.0	[0..28]	[251..10]
gi\|23478774 - gi\|23478774\|gb\|EAA15770.1\| Unknown protein [Plasmodium yoelii yoelii] gi\|82539669 - gi\|82539669\|ref\|XP_724205.1\| hypothetical protein [Plasmodium yoelii yoelii str. 17XNL]	199.0	[0..17]	[251..72]
gi\|3603456 - gi\|3603456\|gb\|AAC35858.1\| polyubiquitin [Capsicum chinense]	198.0	[0..17]	[248..7]

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Predicted Domain #1

Region A:
Residues: [1-269]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMHNSTEESE WEVRPGGMLV QRRDDAASSD HKPLQDPDSA SAAFAQTIRI TVSHGSSHHD  60
   61 LHISAHATFG DVKKALVQKT GLEASELKIL FRGVERDDAE QLQAAGVKDA SKLVVVVEDT 120
  121 NKRVEQQPPV VTKEMEKAIA AVNAVTGEVD KLSDRVVALE VAVNGGTQVA VREFDMAAEL 180
  181 LMRQLLKLDG IEAEGDAKVQ RKAEVRRIQN LQEAVDKLKA RCSNPFVDQS KAAAVSTEWE 240
  241 SFGNGVGSLN PPPPASPSAN VTQDWEKFD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	19.522879
Match:	1oqyA
Description:	Structure of the DNA repair protein hHR23a
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.2	NCBI nr	03/2009
PSI-BLAST	2.2.22	FFAS	ffas03
PDB	10/2008	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits