YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|145357576, gi...
Organism:	Arabidopsis thaliana
Length:	461 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|145357576, gi....

Description	E-value	Query Range	Subject Range
gi\|76661274 - gi\|76661274\|ref\|XP_615219.2\| PREDICTED: similar to Myosin-5A (Myosin Va) (Dilute myosin heavy chain,...	262.0	[0..2]	[437..709]
MYO5A - myosin VA (heavy chain 12, myoxin)	262.0	[0..2]	[437..696]
gi\|68445604 - gi\|68445604\|dbj\|BAE03307.1\| myosin Va [Sus scrofa]	260.0	[0..2]	[437..695]
MYO5A_RAT - Unconventional myosin-Va OS=Rattus norvegicus GN=Myo5a PE=1 SV=1	260.0	[0..2]	[437..696]
gi\|114657109, gi... - gi\|114657111\|ref\|XP_510412.2\| PREDICTED: myosin VA (heavy polypeptide 12, myoxin) isoform 7 [Pan tro...	259.0	[0..2]	[437..696]
gi\|74000721 - gi\|74000721\|ref\|XP_535487.2\| PREDICTED: similar to Myosin-5A (Myosin Va) (Dilute myosin heavy chain,...	259.0	[0..2]	[437..773]

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Predicted Domain #1

Region A:
Residues: [1-78]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGKKAKWFSS VKKAFSPDSK KSKQKLAEGQ NGVISNPPVV DNVRQSSSSP PPALAPREVR  60
   61 VAEVIVERNR DLSPPSTA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	62.0
Match:	2dfsA
Description:	No description for 2dfsA was found.

Predicted Domain #2

Region A:
Residues: [79-461]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DAVNVTATDV PVVPSSSAPG VVRRATPTRF AGKSNEEAAA ILIQTIFRGY LARRALRAMR  60
   61 GLVRLKLLME GSVVKRQAAN TLKCMQTLSR VQSQIRARRI RMSEENQARQ KQLLQKHAKE 120
  121 LAGLKNGDNW NDSIQSKEKV EANLLSKYEA TMRRERALAY SYSHQQNWKN NSKSGNPMFM 180
  181 DPSNPTWGWS WLERWMAGRP LESSEKEQSN SNNDNAASVK GSINRNEAAK SLTRNGSTQP 240
  241 NTPSSARGTP RNKNSFFSPP TPSRLNQSSR KSNDDDSKST ISVLSERNRR HSIAGSSVRD 300
  301 DESLAGSPAL PSYMVPTKSA RARLKPQSPL GGTTQENEGF TDKASAKKRL SYPTSPALPK 360
  361 PRRFSAPPKV ESGGVTVTNG AGS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	8.522879
Match:	1i84S
Description:	Heavy meromyosin subfragment
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.2	NCBI nr	03/2009
PSI-BLAST	2.2.22	FFAS	ffas03
PDB	10/2008	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits