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View Structure Prediction Details

Protein: CCKN_CHICK
Organism: Gallus gallus
Length: 130 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CCKN_CHICK.

Description E-value Query
Range
Subject
Range
CCKN_STRCA - Cholecystokinin OS=Struthio camelus GN=CCK PE=1 SV=1
213.0 [0..1] [130..1]
CCKN_TRASC - Cholecystokinin OS=Trachemys scripta PE=1 SV=2
209.0 [0..1] [130..1]
CCKN_LITCT - Cholecystokinin OS=Lithobates catesbeiana GN=CCK PE=1 SV=2
188.0 [0..1] [130..1]
CCK_PYTMO - Cholecystokinin-8 OS=Python molurus GN=CCK PE=2 SV=1
182.0 [0..1] [130..1]
gi|2246429 - gi|2246429|emb|CAB10585.1| preprocholecystokinin [Squalus acanthias]
177.0 [0..1] [130..1]
gi|38198207 - gi|38198207|dbj|BAD01500.1| cholecystokinin [Anguilla japonica]
163.0 [0..1] [130..1]
CCKNB_XENLA - Cholecystokinin B OS=Xenopus laevis GN=cck-b PE=2 SV=1
163.0 [0..1] [130..1]
gi|55620065 - gi|55620065|ref|XP_516386.1| PREDICTED: cholecystokinin isoform 2 [Pan troglodytes]
163.0 [0..1] [130..1]
gi|30584119, gi|... - gi|60653099|gb|AAX29244.1| cholecystokinin [synthetic construct], gi|60653097|gb|AAX29243.1| cholecy...
162.0 [0..1] [130..1]

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Predicted Domain #1
Region A:
Residues: [1-130]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYGGICICVL LAALSVSSLG QQPAGSHDGS PVAAELQQSL TEPHRHSRAP SSAGPLKPAP  60
   61 RLDGSFEQRA TIGALLAKYL QQARKGSTGR FSVLGNRVQS IDPTHRINDR DYMGWMDFGR 120
  121 RSAEEYEYSS 

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 47.638272
Match: PF00918.8
Description: No description for PF00918.8 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.250 N/A N/A a.29.13 Description not found.
View Download 0.243 N/A N/A d.16.1 FAD-linked reductases, C-terminal domain
View Download 0.212 N/A N/A c.26.2 Adenine nucleotide alpha hydrolases-like


YRC Informatics Platform - Version 3.0
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