YRC Public Data Repository - Protein Structure Prediction

Protein:	ASPA_ARATH
Organism:	Arabidopsis thaliana
Length:	474 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ASPA_ARATH.

Description	E-value	Query Range	Subject Range
gi\|118344558, gi... - gi\|55771082\|dbj\|BAD69801.1\| cathepsin D1 [Takifugu rubripes], gi\|118344558\|ref\|NP_001072052.1\| cathe...	279.0	[0..77]	[472..9]
gi\|148229393, gi... - gi\|48734644\|gb\|AAH72252.1\| MGC82347 protein [Xenopus laevis], gi\|148229393\|ref\|NP_001085403.1\| MGC82...	278.0	[0..77]	[472..14]
gi\|8979711, gi\|1... - gi\|8979711\|emb\|CAB96832.1\| nucleoid DNA-binding protein cnd41-like protein [Arabidopsis thaliana], p...	274.0	[0..39]	[474..8]
gi\|116284100 - gi\|116284100\|gb\|AAI23963.1\| LOC613063 protein [Xenopus tropicalis]	273.0	[0..75]	[472..7]
gi\|28603726, gi\|... - gi\|6224887\|gb\|AAF05998.1\|AF192332_1 pregnancy-associated glycoprotein-15 [Bos taurus], gi\|28603726\|r...	270.0	[0..87]	[471..16]
gi\|21552717 - gi\|21552717\|gb\|AAM62283.1\|AF396662_1 cathepsin D preproprotein [Silurus asotus]	270.0	[0..81]	[471..13]
gi\|9581805 - gi\|9581805\|emb\|CAC00543.1\| necepsin II [Necator americanus]	270.0	[0..41]	[472..4]
gi\|149061703, gi... - gi\|42476045\|ref\|NP_599161.2\| cathepsin D [Rattus norvegicus], gi\|38303993\|gb\|AAH62032.1\| Cathepsin D...	269.0	[0..70]	[472..4]
gi\|22651403 - gi\|22651403\|gb\|AAL61540.1\| cathepsin D precursor [Danio rerio]	269.0	[0..74]	[472..6]

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Predicted Domain #1

Region A:
Residues: [1-73]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSINRNLLNI IIILCICLNL GCNDGAQERE TDSHTIQVSS LLPSSSSSCV LSPRASTTKS  60
   61 SLHVTHRHGT CSR

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.840	a.4.1	Homeodomain-like

Predicted Domain #2

Region A:
Residues: [74-474]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LNNGKATSPD HVEILRLDQA RVNSIHSKLS KKLATDHVSE SKSTDLPAKD GSTLGSGNYI  60
   61 VTVGLGTPKN DLSLIFDTGS DLTWTQCQPC VRTCYDQKEP IFNPSKSTSY YNVSCSSAAC 120
  121 GSLSSATGNA GSCSASNCIY GIQYGDQSFS VGFLAKEKFT LTNSDVFDGV YFGCGENNQG 180
  181 LFTGVAGLLG LGRDKLSFPS QTATAYNKIF SYCLPSSASY TGHLTFGSAG ISRSVKFTPI 240
  241 STITDGTSFY GLNIVAITVG GQKLPIPSTV FSTPGALIDS GTVITRLPPK AYAALRSSFK 300
  301 AKMSKYPTTS GVSILDTCFD LSGFKTVTIP KVAFSFSGGA VVELGSKGIF YVFKISQVCL 360
  361 AFAGNSDDSN AAIFGNVQQQ TLEVVYDGAG GRVGFAPNGC S

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	70.0
Match:	2psgA
Description:	REFINED STRUCTURE OF PORCINE PEPSINOGEN AT 1.8 ANGSTROMS RESOLUTION
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits