YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|17546592
Organism:	Ralstonia solanacearum GMI1000
Length:	288 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|17546592.

Description	E-value	Query Range	Subject Range
gi\|83723946, gi\|... - gi\|83749369\|ref\|ZP_00946364.1\| Formyltetrahydrofolate deformylase [Ralstonia solanacearum UW551], gi...	331.0	[0..1]	[288..28]
gi\|94311174, gi\|... - gi\|94311174\|ref\|YP_584384.1\| formyltetrahydrofolate deformylase [Ralstonia metallidurans CH34], gi\|9...	326.0	[0..1]	[288..1]
gi\|72119311, gi\|... - gi\|73541898\|ref\|YP_296418.1\| formyltetrahydrofolate deformylase [Ralstonia eutropha JMP134], gi\|7211...	322.0	[0..1]	[288..1]
gi\|113527248, gi... - gi\|113868472\|ref\|YP_726961.1\| formyltetrahydrofolate deformylase [Ralstonia eutropha H16], gi\|113527...	321.0	[0..1]	[288..1]
gi\|48786510, gi\|... - gi\|91781734\|ref\|YP_556940.1\| formyltetrahydrofolate deformylase [Burkholderia xenovorans LB400], gi\|...	319.0	[0..2]	[288..3]
gi\|68346410, gi\|... - gi\|70732111\|ref\|YP_261867.1\| formyltetrahydrofolate deformylase [Pseudomonas fluorescens Pf-5], gi\|6...	317.0	[0..2]	[287..12]
gi\|29607500, gi\|... - gi\|29830389\|ref\|NP_825023.1\| formyltetrahydrofolate deformylase [Streptomyces avermitilis MA-4680], ...	314.0	[0..2]	[287..11]
gi\|117927364, gi... - gi\|88932266\|ref\|ZP_01137958.1\| Formyltetrahydrofolate deformylase [Acidothermus cellulolyticus 11B],...	311.0	[0..3]	[288..1]
gi\|187479291, gi... - gi\|187479291\|ref\|YP_787316.1\| formyltetrahydrofolate deformylase [Bordetella avium 197N], gi\|1154238...	311.0	[0..1]	[288..1]
gi\|32141235, gi\|... - gi\|32141235\|ref\|NP_733636.1\| formyltetrahydrofolate deformylase [Streptomyces coelicolor A3(2)], gi\|...	311.0	[0..2]	[287..15]

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Predicted Domain #1

Region A:
Residues: [1-85]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSHSGFILTL SCPDQPGIVH AVSGLLFEQG CNILDSDQFG DEFTGRFFMR VHFVPQGQPL  60
   61 DLQALRERFA PIGERFSMQW GMFDA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	14.0
Match:	1zpvA
Description:	ACT domain protein from Streptococcus pneumoniae
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
transferase activity, transferring aldehyde or ketonic groups	1.82494854621265	bayes_pls_golite062009
catalytic activity	1.01569611874813	bayes_pls_golite062009
transferase activity	0.07375530569672	bayes_pls_golite062009

Predicted Domain #2

Region A:
Residues: [86-288]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AVKPRVMILV SKIGHCLNDL LFRARAGQLP IEIAAIVSNH RDFYQLAASY DVPFLHLPLL  60
   61 KGTDAQKAQQ EARIREIIEE QRIDLVVLAR YMQILSDDLC RQLEGRAINI HHSFLPSFKG 120
  121 AKPYYQAHER GVKLIGATAH YVTAELDEGP IIEQEIERVD HSMDPEQLTA VGRDVECVAL 180
  181 ARAVKWHAEH RILLNGHKTV VFK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	54.522879
Match:	1zlxA
Description:	The apo structure of human glycinamide ribonucleotide transformylase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
hydroxymethyl-, formyl- and related transferase activity	4.30911230869939	bayes_pls_golite062009
glycine hydroxymethyltransferase activity	3.93829204810029	bayes_pls_golite062009
phosphoribosylglycinamide formyltransferase activity	3.16061609458624	bayes_pls_golite062009
catalytic activity	2.53047786804923	bayes_pls_golite062009
methyltransferase activity	1.49959796419617	bayes_pls_golite062009
transferase activity, transferring one-carbon groups	1.49630496597474	bayes_pls_golite062009
transferase activity	1.21569993951472	bayes_pls_golite062009
formyltetrahydrofolate deformylase activity	0.85803295611657	bayes_pls_golite062009
methionyl-tRNA formyltransferase activity	0.27296524587077	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions:

Predicted functions: