YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|17429787
Organism:	Ralstonia solanacearum
Length:	198 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|17429787.

Description	E-value	Query Range	Subject Range
gi\|94311917, gi\|... - gi\|94311917\|ref\|YP_585127.1\| hypothetical protein Rmet_2985 [Ralstonia metallidurans CH34], gi\|93355...	273.0	[0..1]	[198..1]
gi\|83746776, gi\|... - gi\|83746776\|ref\|ZP_00943824.1\| Hypothetical Protein RRSL_02692 [Ralstonia solanacearum UW551], gi\|83... gi\|206595727, gi... - gi\|207744322\|ref\|YP_002260714.1\| hypothetical protein RSIPO_02513 [Ralstonia solanacearum IPO1609], ...	272.0	[0..1]	[198..1]
gi\|91689173, gi\|... - gi\|91785219\|ref\|YP_560425.1\| hypothetical protein Bxe_A0560 [Burkholderia xenovorans LB400], gi\|9168...	264.0	[0..8]	[198..1]
gi\|170133970, gi... - gi\|170701109\|ref\|ZP_02892084.1\| conserved hypothetical protein [Burkholderia ambifaria IOP40-10], gi... gi\|74019730, gi\|... - gi\|74019730\|ref\|ZP_00690343.1\| conserved hypothetical protein [Burkholderia ambifaria AMMD], gi\|7260... gi\|171992136, gi... - gi\|172059619\|ref\|YP_001807271.1\| hypothetical protein BamMC406_0558 [Burkholderia ambifaria MC40-6],...	257.0	[0..8]	[198..1]
gi\|134137876, gi... - gi\|67546166\|ref\|ZP_00424082.1\| conserved hypothetical protein [Burkholderia vietnamiensis G4], gi\|67...	257.0	[0..8]	[198..1]
gi\|118648474, gi... - gi\|170731954\|ref\|YP_001763901.1\| hypothetical protein Bcenmc03_0601 [Burkholderia cenocepacia MC0-3]... gi\|84356734, gi\|... - gi\|84356734\|ref\|ZP_00981570.1\| hypothetical protein BcenP_01001161 [Burkholderia cenocepacia PC184],... gi\|206561730, gi... - gi\|206561730\|ref\|YP_002232495.1\| hypothetical protein BCAL3393 [Burkholderia cenocepacia J2315], gi\|... gi\|107021710, gi... - gi\|67660399\|ref\|ZP_00457747.1\| conserved hypothetical protein [Burkholderia cenocepacia AU 1054], gi... gi\|116646745, gi... - gi\|67666546\|ref\|ZP_00463792.1\| conserved hypothetical protein [Burkholderia cenocepacia HI2424], gi\|...	255.0	[0..8]	[198..1]
gi\|113527881, gi... - gi\|113869105\|ref\|YP_727594.1\| hypothetical protein H16_A3151 [Ralstonia eutropha H16], gi\|113527881\|...	253.0	[0..2]	[198..1]
gi\|84360788, gi\|... - gi\|84360788\|ref\|ZP_00985480.1\| hypothetical protein BdolA_01002754 [Burkholderia dolosa AUO158], gi\|...	250.0	[0..8]	[198..1]
gi\|78065191, gi\|... - gi\|78065191\|ref\|YP_367960.1\| hypothetical protein Bcep18194_A3715 [Burkholderia sp. 383], gi\|7796593...	249.0	[0..8]	[198..1]
gi\|72119943, gi\|... - gi\|73542530\|ref\|YP_297050.1\| hypothetical protein Reut_A2845 [Ralstonia eutropha JMP134], gi\|7211994...	246.0	[0..1]	[198..1]

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Predicted Domain #1

Region A:
Residues: [1-84]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTTNMFGLDD SLTARDERVA RETWHKAQNL YDGVLGMQSL GPRVGGAAKL MPQDANLKDD  60
   61 GGREDAMNLF KTVRPNIVQS IRAF

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [85-198]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RVADLAEAAT GLGQHFLYAN CAAATTKGEV LDVIAREFLF PKHFGKNFDA LADCLTDMIF  60
   61 KAGPQPGFVI VLEGLPCAPK FDKEARETLL DVFRDAAEFW GERKVQFRVF YSFA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	23.39794
Match:	1a19A
Description:	Barstar (barnase inhibitor)
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits