YRC Public Data Repository - Protein Structure Prediction

Protein:	AROK_RALSO
Organism:	Ralstonia solanacearum
Length:	190 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for AROK_RALSO.

Description	E-value	Query Range	Subject Range
gi\|94312198, gi\|... - gi\|94312198\|ref\|YP_585408.1\| shikimate kinase [Ralstonia metallidurans CH34], gi\|93356050\|gb\|ABF1013...	167.0	[0..4]	[184..36]
gi\|207089357 - gi\|207089357\|gb\|EDZ66629.1\| shikimate kinase [Nitrosococcus oceani AFC27] AROK_NITOC - Shikimate kinase OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) GN=aroK PE=3 SV=1 gi\|224409703, gi... - gi\|254436246\|ref\|ZP_05049753.1\| shikimate kinase [Nitrosococcus oceani AFC27], gi\|224409703\|ref\|YP_0...	164.0	[0..1]	[184..1]
AROK_THICR - Shikimate kinase OS=Thiomicrospira crunogena (strain XCL-2) GN=aroK PE=3 SV=1	163.0	[0..1]	[174..1]
AROK_CUPPJ - Shikimate kinase OS=Cupriavidus pinatubonensis (strain JMP 134 / LMG 1197) GN=aroK PE=3 SV=1	163.0	[0..4]	[182..6]
gi\|67663370, gi\|... - gi\|67663370\|ref\|ZP_00460653.1\| Shikimate kinase [Burkholderia cenocepacia HI2424], gi\|67103213\|gb\|EA...	162.0	[0..4]	[177..14]
gi\|83719637, gi\|... - gi\|83719637\|ref\|YP_443528.1\| shikimate kinase [Burkholderia thailandensis E264], gi\|83653462\|gb\|ABC3...	162.0	[0..5]	[177..24]
gi\|76810842, gi\|... - gi\|76810842\|ref\|YP_335093.1\| shikimate kinase [Burkholderia pseudomallei 1710b], gi\|76580295\|gb\|ABA4...	162.0	[0..5]	[177..24]
AROK_BURL3 - Shikimate kinase OS=Burkholderia lata (strain ATCC 17760 / LMG 22485 / NCIMB 9086 / R18194 / 383) GN... AROK_BURS3 - Shikimate kinase OS=Burkholderia sp. (strain 383) GN=aroK PE=3 SV=1	162.0	[0..4]	[177..8]
AROK_PSYWF - Shikimate kinase OS=Psychrobacter sp. (strain PRwf-1) GN=aroK PE=3 SV=1	162.0	[0..4]	[171..6]
gi\|89346433, gi\|... - gi\|89901696\|ref\|YP_524167.1\| shikimate kinase [Rhodoferax ferrireducens T118], gi\|89346433\|gb\|ABD706...	161.0	[0..4]	[182..1]

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Predicted Domain #1

Region A:
Residues: [1-190]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVSNVFFVG LMGAGKTTVG RAVARRLDLP FFDSDHEIEA RCGVRVPVIF EHEGEMGFRD  60
   61 RETQMIDELT ARHGVVVATG GGAVLRPENR AFLRERGTVI YLRANPHDLY LRTRHDKNRP 120
  121 LLQTENPRAR LEELHAIRDP LYREVAHFVI ETGKPTVAQL VNMVLMQLEV AGIVVPPAAS 180
  181 SPTSQVSRQS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	37.69897
Match:	1kagA
Description:	Shikimate kinase (AroK)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.37148167194523	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: