YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|17547821
Organism:	Ralstonia solanacearum GMI1000
Length:	162 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|17547821.

Description	E-value	Query Range	Subject Range
gi\|83746409, gi\|... - gi\|83746409\|ref\|ZP_00943461.1\| Transcriptional regulator, AsnC family [Ralstonia solanacearum UW551]... gi\|206596047, gi... - gi\|207744640\|ref\|YP_002261032.1\| hypothetical protein RSIPO_02851 [Ralstonia solanacearum IPO1609], ... gi\|206587985, gi... - gi\|207722801\|ref\|YP_002253236.1\| hypothetical protein RSMK05446 [Ralstonia solanacearum MolK2], gi\|2...	182.0	[0..1]	[162..1]
gi\|73542900, gi\|... - gi\|73542900\|ref\|YP_297420.1\| AsnC family transcriptional regulator [Ralstonia eutropha JMP134], gi\|7...	175.0	[0..1]	[160..1]
gi\|94312310, gi\|... - gi\|94312310\|ref\|YP_585520.1\| AsnC family transcriptional regulator [Ralstonia metallidurans CH34], g...	175.0	[0..1]	[160..1]
gi\|193224893, gi... - gi\|194291058\|ref\|YP_002006965.1\| putative transcriptional regulator, AsnC/Lrp family [Cupriavidus ta... gi\|113528244, gi... - gi\|113869468\|ref\|YP_727957.1\| AsnC family transcriptional regulator [Ralstonia eutropha H16], gi\|113...	174.0	[0..1]	[160..1]
gi\|33577088, gi\|... - gi\|33602646\|ref\|NP_890206.1\| transcription regulator AsnC [Bordetella bronchiseptica RB50], gi\|33577...	174.0	[0..1]	[160..22]
gi\|33571902, gi\|... - gi\|33592257\|ref\|NP_879901.1\| transcription regulator AsnC [Bordetella pertussis Tohama I], gi\|335719...	173.0	[0..1]	[160..1]
gi\|33574172 - gi\|33574172\|emb\|CAE38504.1\| AsnC-family transcriptional regulator [Bordetella parapertussis] gi\|33597744 - gi\|33597744\|ref\|NP_885387.1\| transcription regulator AsnC [Bordetella parapertussis 12822]	171.0	[0..1]	[160..5]
gi\|76583520, gi\|... - gi\|76819047\|ref\|YP_335941.1\| bkd operon transcriptional regulator [Burkholderia pseudomallei 1710b],...	170.0	[0..2]	[160..58]
gi\|46318821, gi\|... - gi\|67549552\|ref\|ZP_00427410.1\| regulatory proteins, AsnC/Lrp [Burkholderia vietnamiensis G4], gi\|675...	170.0	[0..1]	[160..1]
gi\|169814899, gi... - gi\|170731657\|ref\|YP_001763604.1\| AsnC family transcriptional regulator [Burkholderia cenocepacia MC0... gi\|116646435, gi... - gi\|67667846\|ref\|ZP_00465054.1\| regulatory proteins, AsnC/Lrp [Burkholderia cenocepacia HI2424], gi\|6... gi\|67091311, gi\|... - gi\|67661103\|ref\|ZP_00458431.1\| regulatory proteins, AsnC/Lrp [Burkholderia cenocepacia AU 1054], gi\|...	170.0	[0..1]	[160..1]

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Predicted Domain #1

Region A:
Residues: [1-162]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKVELDKID RKILEVLQSN GRLTNLEVAE RVNLSPSPCL RRIRRLEESG VIRQYAALLD  60
   61 PGKIGLGLSA YINVRLEKQG GAPKGKAPSD IFRAAVATWP EVVTCYAMTG EMDYLLKVFV 120
  121 EDMDHFARFI RDQLLAHPAV IDVKSSFALE RIKDTTALPV VV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	40.39794
Match:	2p5vA
Description:	No description for 2p5vA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits