YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|17549179
Organism:	Ralstonia solanacearum GMI1000
Length:	223 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|17549179.

Description	E-value	Query Range	Subject Range
gi\|72122218, gi\|... - gi\|73538881\|ref\|YP_299248.1\| cell morphogenesis/cell wall metabolism regulator [Ralstonia eutropha J...	258.0	[0..1]	[219..1]
gi\|42629025 - gi\|42629025\|ref\|ZP_00154575.1\| COG2846: Regulator of cell morphogenesis and NO signaling [Haemophilu...	258.0	[0..1]	[220..1]
gi\|113530759, gi... - gi\|116696260\|ref\|YP_841836.1\| cell morphogenesis/cell wall metabolism regulator [Ralstonia eutropha ...	258.0	[0..1]	[222..1]
gi\|197242345, gi... - gi\|197264090\|ref\|ZP_03164164.1\| regulator of cell morphogenesis and NO signaling [Salmonella enteric... YTFE_SALTY, RCMN... - Iron-sulfur cluster repair protein YtfE OS=Salmonella typhimurium GN=ytfE PE=3 SV=1, Regulator of ce... lcl\|NC_016856.1_... - [gene=ytfE] [protein=cell morphogenesis/cell wall metabolism regulator] [protein_id=YP_005240714.1] ... RCMNS_SALTY - Regulator of cell morphogenesis and NO signaling OS=Salmonella typhimurium GN=ytfE PE=3 SV=1 YTFE_SALTY - Iron-sulfur cluster repair protein YtfE OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 7007... gi\|167991172, gi... - gi\|205330323\|gb\|EDZ17087.1\| regulator of cell morphogenesis and NO signaling [Salmonella enterica su...	255.0	[0..1]	[223..1]
gi\|238910556 - gi\|238910556\|ref\|ZP_04654393.1\| cell morphogenesis/cell wall metabolism regulator [Salmonella enteri... YTFE_SALG2 - Iron-sulfur cluster repair protein YtfE OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=ytf... gi\|204926968, gi... - gi\|204926968\|ref\|ZP_03218170.1\| regulator of cell morphogenesis and NO signaling [Salmonella enteric... YTFE_SALPC - Iron-sulfur cluster repair protein YtfE OS=Salmonella paratyphi C (strain RKS4594) GN=ytfE PE=3 SV=1 YTFE_SALEP - Iron-sulfur cluster repair protein YtfE OS=Salmonella enteritidis PT4 (strain P125109) GN=ytfE PE=3 ... YTFE_SALPA - Iron-sulfur cluster repair protein YtfE OS=Salmonella paratyphi A (strain ATCC 9150 / SARB42) GN=ytf... YTFE_SALA4 - Iron-sulfur cluster repair protein YtfE OS=Salmonella agona (strain SL483) GN=ytfE PE=3 SV=1 gi\|194458414, gi... - gi\|194472050\|ref\|ZP_03078034.1\| regulator of cell morphogenesis and NO signaling [Salmonella enteric... YTFE_SALDC - Iron-sulfur cluster repair protein YtfE OS=Salmonella dublin (strain CT_02021853) GN=ytfE PE=3 SV=1 YTFE_SALPK - Iron-sulfur cluster repair protein YtfE OS=Salmonella paratyphi A (strain AKU_12601) GN=ytfE PE=3 SV... gi\|205342276, gi... - gi\|205342276\|gb\|EDZ29040.1\| regulator of cell morphogenesis and NO signaling [Salmonella enterica su... YTFE_SALPB - Iron-sulfur cluster repair protein YtfE OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=y... gi\|195632942, gi... - gi\|195632942\|gb\|EDX51396.1\| regulator of cell morphogenesis and NO signaling [Salmonella enterica su... YTFE_SALHS - Iron-sulfur cluster repair protein YtfE OS=Salmonella heidelberg (strain SL476) GN=ytfE PE=3 SV=1 YTFE_SALNS - Iron-sulfur cluster repair protein YtfE OS=Salmonella newport (strain SL254) GN=ytfE PE=3 SV=1 gi\|168232747, gi... - gi\|205332972\|gb\|EDZ19736.1\| regulator of cell morphogenesis and NO signaling [Salmonella enterica su... gi\|205323879, gi... - gi\|205323879\|gb\|EDZ11718.1\| regulator of cell morphogenesis and NO signaling [Salmonella enterica su... gi\|205348673, gi... - gi\|205348673\|gb\|EDZ35304.1\| regulator of cell morphogenesis and NO signaling [Salmonella enterica su... gi\|168244106, gi... - gi\|205337067\|gb\|EDZ23831.1\| regulator of cell morphogenesis and NO signaling [Salmonella enterica su... RCMNS_SALPB - Regulator of cell morphogenesis and NO signaling OS=Salmonella paratyphi B (strain ATCC BAA-1250 / S... YTFE_SALPA, RCMN... - Iron-sulfur cluster repair protein YtfE OS=Salmonella paratyphi A GN=ytfE PE=3 SV=1, Regulator of ce...	255.0	[0..1]	[223..1]
YTFE_SALCH - Iron-sulfur cluster repair protein YtfE OS=Salmonella choleraesuis (strain SC-B67) GN=ytfE PE=3 SV=1 YTFE_SALCH, RCMN... - Iron-sulfur cluster repair protein YtfE OS=Salmonella choleraesuis GN=ytfE PE=3 SV=1, Regulator of c... RCMNS_SALCH - Regulator of cell morphogenesis and NO signaling OS=Salmonella choleraesuis GN=ytfE PE=3 SV=1	254.0	[0..1]	[223..1]
YTFE_ECOL6 - Iron-sulfur cluster repair protein YtfE OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPE... YTFE_ECO27 - Iron-sulfur cluster repair protein YtfE OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=ytfE... YTFE_ECOUT - Iron-sulfur cluster repair protein YtfE OS=Escherichia coli (strain UTI89 / UPEC) GN=ytfE PE=3 SV=1 YTFE_ESCF3 - Iron-sulfur cluster repair protein YtfE OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / C... YTFE_ECO7I - Iron-sulfur cluster repair protein YtfE OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=ytfE PE=... gi\|227886738, gi... - gi\|227886738\|ref\|ZP_04004543.1\| cell morphogenesis/cell wall metabolism regulator [Escherichia coli ... YTFE_ECOK1 - Iron-sulfur cluster repair protein YtfE OS=Escherichia coli O1:K1 / APEC GN=ytfE PE=3 SV=1 gi\|237703886, gi... - gi\|237703886\|ref\|ZP_04534367.1\| cell morphogenesis/cell wall metabolism regulator [Escherichia sp. 3... YTFE_ECOSM - Iron-sulfur cluster repair protein YtfE OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=ytfE PE=3 SV... sp\|B7UQM4\|YTFE_ECO27 - Iron-sulfur cluster repair protein YtfE OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=ytfE... gi\|170766934, gi... - gi\|170766934\|ref\|ZP_02901387.1\| regulator of cell morphogenesis and NO signaling [Escherichia albert... YTFE_ECOL6, RCMN... - Iron-sulfur cluster repair protein YtfE OS=Escherichia coli O6 GN=ytfE PE=3 SV=1, Regulator of cell ...	253.0	[0..1]	[223..1]
YTFE_HAEIN, Y167... - (P45312) Hypothetical protein HI1677, Uncharacterized protein HI_1677 OS=Haemophilus influenzae GN=H... Y1677_HAEIN - Probable iron-sulfur cluster repair protein HI_1677 OS=Haemophilus influenzae (strain ATCC 51907 / D...	253.0	[0..1]	[220..1]

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Predicted Domain #1

Region A:
Residues: [1-65]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPLLDQPLGH LARNIPGATG IFHEYQLDFC CGGQHSLRDA AQAKGIDAAP IAARLQALQA  60
   61 EATPD

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	25.619789
Match:	PF04405.5
Description:	No description for PF04405.5 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [66-223]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GAVDWSAVSP SMLIDHILER FHERHREQLP ELIRLARRVE HVHGDRPECP VGLSELLEAM  60
   61 WQELESHMQK EEQILFPMLA RGHGLRAGGP IAVMRMEHDQ HGEALQRLMT LTNDITPPRA 120
  121 ACTTWRALYL GLSVFREDLM EHIHLENNIL FEGAVAAD

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	3.53
Match:	2p0nA
Description:	No description for 2p0nA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits