YRC Public Data Repository - Protein Structure Prediction

Protein:	YDHZ_SALTY
Organism:	Salmonella enterica subsp. enterica serovar Typhimurium
Length:	70 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YDHZ_SALTY.

Description	E-value	Query Range	Subject Range
gi\|62127612, gi\|... - gi\|62179979\|ref\|YP_216396.1\| hypothetical protein SC1409 [Salmonella enterica subsp. enterica serova...	109.0	[0..1]	[70..18]
gi\|82543955, gi\|... - gi\|82543955\|ref\|YP_407902.1\| hypothetical protein SBO_1455 [Shigella boydii Sb227], gi\|81245366\|gb\|A... gi\|187733648, gi... - gi\|75175204\|ref\|ZP_00695522.1\| hypothetical protein SboyB_01004667 [Shigella boydii BS512], gi\|18773...	106.0	[0..1]	[69..1]
gi\|12515674, gi\|... - gi\|15802087\|ref\|NP_288109.1\| hypothetical protein Z2703 [Escherichia coli O157:H7 EDL933], gi\|125156... YDHZ_ECOL6 - Uncharacterized protein ydhZ OS=Escherichia coli O6 GN=ydhZ PE=4 SV=1 gi\|81241300, gi\|... - gi\|82777152\|ref\|YP_403501.1\| hypothetical protein SDY_1904 [Shigella dysenteriae Sd197], gi\|81241300... gi\|227837087, gi... - gi\|227885908\|ref\|ZP_04003713.1\| conserved hypothetical protein [Escherichia coli 83972], gi\|22783708... gi\|89108515, gi\|... - gi\|89108515\|ref\|AP_002295.1\| hypothetical protein [Escherichia coli str. K-12 substr. W3110], gi\|856... gi\|237705621, gi... - gi\|237705621\|ref\|ZP_04536102.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22690... gi\|24052036, gi\|... - gi\|24113063\|ref\|NP_707573.1\| hypothetical protein SF1703 [Shigella flexneri 2a str. 301], gi\|2405203... gi\|188493116, gi... - gi\|75512893\|ref\|ZP_00735374.1\| hypothetical protein Ecol5_01002875 [Escherichia coli 53638], gi\|1884... gi\|91210888, gi\|... - gi\|91210888\|ref\|YP_540874.1\| hypothetical protein UTI89_C1867 [Escherichia coli UTI89], gi\|91072462\|... gi\|238900890, gi... - gi\|238900890\|ref\|YP_002926686.1\| hypothetical protein BWG_1489 [Escherichia coli BW2952], gi\|2388628... YDHZ_SHIFL - Uncharacterized protein YdhZ OS=Shigella flexneri GN=ydhZ PE=4 SV=1 gi\|73855477, gi\|... - gi\|74312000\|ref\|YP_310419.1\| hypothetical protein SSON_1481 [Shigella sonnei Ss046], gi\|73855477\|gb\|... gi\|15831636, gi\|... - gi\|15831636\|ref\|NP_310409.1\| hypothetical protein ECs2382 [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|157066820, gi... - gi\|157161140\|ref\|YP_001458458.1\| hypothetical protein EcHS_A1756 [Escherichia coli HS], gi\|157066820... gi\|251785129, gi... - gi\|251785129\|ref\|YP_002999433.1\| hypothetical protein B21_01634 [Escherichia coli BL21], gi\|24237740... gi\|30063187, gi\|... - gi\|30063187\|ref\|NP_837358.1\| hypothetical protein S1835 [Shigella flexneri 2a str. 2457T], gi\|300414... gi\|253773368, gi... - gi\|254288525\|ref\|YP_003054273.1\| hypothetical protein ECD_01644 [Escherichia coli BL21(DE3)], gi\|253... YDHZ_ECOL6 - Uncharacterized protein YdhZ OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=ydhZ ... gi\|254161736, gi... - gi\|254161736\|ref\|YP_003044844.1\| hypothetical protein ECB_01644 [Escherichia coli B str. REL606], gi... EG13960 - uncharacterized protein / Function unknown gi\|254592692, gi... - gi\|254793292\|ref\|YP_003078129.1\| hypothetical protein ECSP_2242 [Escherichia coli O157:H7 str. TW143... YDHZ_ECO57 - Uncharacterized protein YdhZ OS=Escherichia coli O157:H7 GN=ydhZ PE=4 SV=1 gi\|75190713, gi\|... - gi\|75190713\|ref\|ZP_00703980.1\| hypothetical protein EcolE_01004024 [Escherichia coli E24377A], gi\|15... gi\|218351968, gi... - gi\|218695236\|ref\|YP_002402903.1\| hypothetical protein EC55989_1842 [Escherichia coli 55989], gi\|2183... gi\|75207892 - gi\|75207892\|ref\|ZP_00708351.1\| hypothetical protein EcolB_01004761 [Escherichia coli B171] gi\|218427181, gi... - gi\|218689617\|ref\|YP_002397829.1\| hypothetical protein ECED1_1874 [Escherichia coli ED1a], gi\|2184271... gi\|218705173, gi... - gi\|218705173\|ref\|YP_002412692.1\| hypothetical protein ECUMN_1964 [Escherichia coli UMN026], gi\|21843... gi\|83584586 - gi\|83584586\|ref\|ZP_00923256.1\| hypothetical protein Ecol1_01004187 [Escherichia coli 101-1] gi\|218369746, gi... - gi\|218699760\|ref\|YP_002407389.1\| hypothetical protein ECIAI39_1383 [Escherichia coli IAI39], gi\|2183... gi\|75238766 - gi\|75238766\|ref\|ZP_00722750.1\| hypothetical protein EcolF_01003285 [Escherichia coli F11] gi\|110343388, gi... - gi\|110641796\|ref\|YP_669526.1\| hypothetical protein ECP_1622 [Escherichia coli 536], gi\|110343388\|gb\|... gi\|75257092 - gi\|75257092\|ref\|ZP_00728652.1\| hypothetical protein EcolE2_01003143 [Escherichia coli E22] gi\|110615199, gi... - gi\|110805651\|ref\|YP_689171.1\| hypothetical protein SFV_1697 [Shigella flexneri 5 str. 8401], gi\|1106... EG13960 - uncharacterized protein / Function unknown gi\|75214843 - gi\|75214843\|ref\|ZP_00713326.1\| hypothetical protein EcolE1_01004502 [Escherichia coli E110019] gi\|75227080 - gi\|75227080\|ref\|ZP_00713903.1\| hypothetical protein EcolB7_01004461 [Escherichia coli B7A] gi\|169754903, gi... - gi\|170019975\|ref\|YP_001724929.1\| hypothetical protein EcolC_1956 [Escherichia coli ATCC 8739], gi\|16... gi\|195940386 - gi\|195940386\|ref\|ZP_03085768.1\| hypothetical protein EscherichcoliO157_28985 [Escherichia coli O157:... gi\|170081335, gi... - gi\|170081335\|ref\|YP_001730655.1\| hypothetical protein ECDH10B_1809 [Escherichia coli str. K-12 subst... gi\|215486850, gi... - gi\|215486850\|ref\|YP_002329281.1\| hypothetical protein E2348C_1760 [Escherichia coli O127:H6 str. E23... gi\|209918989, gi... - gi\|209918989\|ref\|YP_002293073.1\| hypothetical protein ECSE_1798 [Escherichia coli SE11], gi\|20991224... gi\|218365313, gi... - gi\|218558544\|ref\|YP_002391457.1\| hypothetical protein ECS88_1723 [Escherichia coli S88], gi\|21836531... gi\|218554241, gi... - gi\|218554241\|ref\|YP_002387154.1\| hypothetical protein ECIAI1_1726 [Escherichia coli IAI1], gi\|218361... YDHZ_ECOLI - Hypothetical protein ydhZ - Escherichia coli gi\|124531596, gi... - gi\|124531596\|ref\|ZP_01701807.1\| conserved hypothetical protein [Escherichia coli B], gi\|124498451\|gb...	106.0	[0..1]	[69..1]
gi\|217328852, gi... - gi\|217328852\|ref\|ZP_03444933.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. TW1458... gi\|209400728, gi... - gi\|209400728\|ref\|YP_002270744.1\| hypothetical protein ECH74115_2389 [Escherichia coli O157:H7 str. E... gi\|208739372, gi... - gi\|208819249\|ref\|ZP_03259569.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4042... gi\|208816893, gi... - gi\|208816893\|ref\|ZP_03258013.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4045... gi\|208724891, gi... - gi\|208810375\|ref\|ZP_03252251.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4206... gi\|194440075, gi... - gi\|194440075\|ref\|ZP_03072130.1\| conserved hypothetical protein [Escherichia coli 101-1], gi\|19442099... gi\|194430707, gi... - gi\|194430707\|ref\|ZP_03063137.1\| conserved hypothetical protein [Escherichia coli B171], gi\|194411250... gi\|193071587, gi... - gi\|193071587\|ref\|ZP_03052494.1\| conserved hypothetical protein [Escherichia coli E110019], gi\|192955... gi\|192927408, gi... - gi\|193064921\|ref\|ZP_03045997.1\| conserved hypothetical protein [Escherichia coli E22], gi\|192927408\|... gi\|190906312, gi... - gi\|191173470\|ref\|ZP_03034998.1\| conserved hypothetical protein [Escherichia coli F11], gi\|190906312\|... gi\|191169561, gi... - gi\|191169561\|ref\|ZP_03031286.1\| conserved hypothetical protein [Escherichia coli B7A], gi\|190900397\|... gi\|75195752 - gi\|75195752\|ref\|ZP_00705822.1\| hypothetical protein EcolH_01001551 [Escherichia coli HS] gi\|189406312, gi... - gi\|189406312\|ref\|ZP_02827708.2\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC508]... gi\|189370040, gi... - gi\|189405451\|ref\|ZP_02815509.2\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC869]... gi\|189404541, gi... - gi\|189404541\|ref\|ZP_02790140.2\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4501... gi\|189403631, gi... - gi\|189403631\|ref\|ZP_02796667.2\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4486... gi\|189354241, gi... - gi\|189402691\|ref\|ZP_02784145.2\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4401... gi\|189010717, gi... - gi\|189010717\|ref\|ZP_02808956.2\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4076... gi\|188025285, gi... - gi\|188025285\|ref\|ZP_02777384.2\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4113... gi\|187776486, gi... - gi\|187776486\|ref\|ZP_02803038.2\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4196... gi\|170683892, gi... - gi\|170683892\|ref\|YP_001743579.1\| hypothetical protein EcSMS35_1521 [Escherichia coli SMS-3-5], gi\|17...	87.0	[0..14]	[69..1]

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Predicted Domain #1

Region A:
Residues: [1-70]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTKPTKDDEL YREMCRVVGK VVLEMRDLGQ EPKYIVIAGV LRTALANQRI QRSALEKQAM  60
   61 ETVINALARS

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits