YRC Public Data Repository - Protein Structure Prediction

Protein:	Y1335_PYRKO
Organism:	Thermococcus kodakarensis
Length:	138 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Y1335_PYRKO.

Description	E-value	Query Range	Subject Range
Y973_PYRAB - UPF0201 protein PYRAB09730 OS=Pyrococcus abyssi (strain GE5 / Orsay) GN=PYRAB09730 PE=3 SV=1 Y973_PYRAB - UPF0201 protein PYRAB09730 OS=Pyrococcus abyssi GN=PYRAB09730 PE=3 SV=1	177.0	[0..1]	[138..1]
YA10_PYRHO, Y101... - (O58738) Hypothetical UPF0201 protein PH1010, UPF0201 protein PH1010 OS=Pyrococcus horikoshii GN=PH1... Y1010_PYRHO - UPF0201 protein PH1010 OS=Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 10...	173.0	[0..1]	[138..1]
Y1297_PYRFU, YC9... - (P58830) Hypothetical UPF0201 protein PF1297, UPF0201 protein PF1297 OS=Pyrococcus furiosus GN=PF129... Y1297_PYRFU - UPF0201 protein PF1297 OS=Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=PF1...	170.0	[0..2]	[138..4]
Y949_SULTO - UPF0201 protein ST0949 OS=Sulfolobus tokodaii GN=ST0949 PE=3 SV=1 Y949_SULTO - UPF0201 protein STK_09490 OS=Sulfolobus tokodaii (strain DSM 16993 / JCM 10545 / NBRC 100140 / 7) GN...	158.0	[0..5]	[137..1]
gi\|241218695, gi... - gi\|241769660\|ref\|ZP_04767078.1\| Protein of unknown function DUF54 [Sulfolobus solfataricus 98/2], gi... Y1042_SULSO - UPF0201 protein SSO1042 OS=Sulfolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) G... Y1042_SULSO, YA4... - (Q97Z89) Hypothetical UPF0201 protein SSO1042, UPF0201 protein SSO1042 OS=Sulfolobus solfataricus GN...	148.0	[0..5]	[137..1]
gi\|110605026, gi... - gi\|110605026\|ref\|ZP_01393073.1\| uncharacterized protein conserved in archaea [Thermofilum pendens Hr...	147.0	[0..2]	[137..13]
Y1285_SULAC - UPF0201 protein Saci_1285 OS=Sulfolobus acidocaldarius GN=Saci_1285 PE=3 SV=1 Y1285_SULAC - UPF0201 protein Saci_1285 OS=Sulfolobus acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929 / NBR...	141.0	[0..5]	[137..1]
Y1632_PYRAE - UPF0201 protein PAE1632 OS=Pyrobaculum aerophilum (strain ATCC 51768 / IM2 / DSM 7523 / JCM 9630 / N... Y1632_PYRAE, YG3... - (Q8ZWT2) Hypothetical UPF0201 protein PAE1632, UPF0201 protein PAE1632 OS=Pyrobaculum aerophilum GN=...	140.0	[0..6]	[135..1]
gi\|56295598 - gi\|56295598\|emb\|CAH04839.1\| hypothetical Dephospho-CoA kinase (CoaE) [uncultured archaeon] gi\|110620821, gi... - gi\|147920769\|ref\|YP_685425.1\| hypothetical protein RCIX710 [uncultured methanogenic archaeon RC-I], ...	138.0	[0..6]	[138..181]
Y1751_AERPE - UPF0201 protein APE_1751 OS=Aeropyrum pernix (strain ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 10013... YH51_AERPE, Y175... - (Q9YB44) Hypothetical UPF0201 protein APE1751, UPF0201 protein APE_1751 OS=Aeropyrum pernix GN=APE_1...	137.0	[0..6]	[137..8]

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Predicted Domain #1

Region A:
Residues: [1-138]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSELFEEVEV EAYVYPTEDI EKVKKAMLNL IPDLEFEAFD RGDYIILTAK TRSRKALSRL  60
   61 YELFRGQAIL DTARSFLEEG YFGEEIIIKV NKQAAYAGVV NFNEESPLGP ITIIIRTKDP 120
  121 QRLMKWLAPR TKDGVPIE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	35.69897
Match:	2nwuA
Description:	No description for 2nwuA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits