YRC Public Data Repository - Protein Structure Prediction

Protein:	NOP10_PYRKO
Organism:	Thermococcus kodakarensis
Length:	59 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NOP10_PYRKO.

Description	E-value	Query Range	Subject Range
NOP10_PYRAB, NO1... - Ribosome biogenesis protein Nop10 OS=Pyrococcus abyssi GN=PYRAB08470 PE=1 SV=1, (Q9V0E3) Ribosome bi... NOP10_PYRAB - Ribosome biogenesis protein Nop10 OS=Pyrococcus abyssi (strain GE5 / Orsay) GN=nop10 PE=1 SV=1	86.0	[0..1]	[58..1]
gi\|14591746 - gi\|14591746\|ref\|NP_142880.1\| H/ACA RNA-protein complex component Nop10p [Pyrococcus horikoshii OT3]	86.0	[0..1]	[58..1]
NO10_PYRFU, NOP1... - Ribosome biogenesis protein Nop10 OS=Pyrococcus furiosus GN=PF1141 PE=1 SV=1, (Q8U1R4) Ribosome biog... NOP10_PYRFU - Ribosome biogenesis protein Nop10 OS=Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / ...	84.0	[0..1]	[58..1]
gi\|88192801, gi\|... - gi\|88192802\|pdb\|2EY4\|F Chain F, Crystal Structure Of A Cbf5-Nop10-Gar1 Complex, gi\|88192801\|pdb\|2EY4...	81.0	[0..1]	[55..1]
NOP10_SULSO, NO1... - Ribosome biogenesis protein Nop10 OS=Sulfolobus solfataricus GN=SSO7115 PE=3 SV=1, (Q97Z78) Ribosome... NOP10_SULSO - Ribosome biogenesis protein Nop10 OS=Sulfolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 113...	79.0	[0..1]	[50..1]
NOP10_SULTO - Ribosome biogenesis protein Nop10 OS=Sulfolobus tokodaii (strain DSM 16993 / JCM 10545 / NBRC 100140... NOP10_SULTO, NO1... - Ribosome biogenesis protein Nop10 OS=Sulfolobus tokodaii GN=ST0940.1 PE=3 SV=1, (Q973G1) Ribosome bi...	79.0	[0..1]	[50..1]
gi\|56471997, gi\|... - gi\|67479055\|ref\|XP_654909.1\| ribosome biogenesis protein Nop10 [Entamoeba histolytica HM-1:IMSS], gi...	75.0	[0..3]	[52..1]
NOP10_METBU - Ribosome biogenesis protein Nop10 OS=Methanococcoides burtonii (strain DSM 6242 / NBRC 107633 / OCM ...	74.0	[0..1]	[51..1]
gi\|7482382 - gi\|7482382\|pir\|\|F69040 hypothetical protein MTH1307 - Methanobacterium thermoautotrophicum (strain D... NOP10_METTH - Ribosome biogenesis protein Nop10 OS=Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM...	74.0	[0..3]	[56..1]
NOP10_METAC - Ribosome biogenesis protein Nop10 OS=Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM ... NO10_METAC, NOP1... - Ribosome biogenesis protein Nop10 OS=Methanosarcina acetivorans GN=MA_0643 PE=3 SV=1, (Q8TT00) Ribos...	73.0	[0..1]	[50..1]

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Predicted Domain #1

Region A:
Residues: [1-59]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHFRIRKCPN CGRYTLKEVC PVCGSETKVA HPPRFSPEDP YGEYRRRLKR ELLGIGRRS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	17.69897
Match:	2ausD
Description:	No description for 2ausD was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits