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View Structure Prediction Details

Protein: gi|51858959
Organism: Xenopus laevis
Length: 140 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|51858959.

Description E-value Query
Range		 Subject
Range
gi|76673500 - gi|76673500|ref|XP_590663.2| PREDICTED: similar to nuclear transport factor 2-like export factor 2 [...
 189.0 [0..1] [140..147]
gi|73991013 - gi|73991013|ref|XP_534323.2| PREDICTED: similar to NTF2-related export protein 1 [Canis familiaris]
tr|M3W5Z3|M3W5Z3... - Nuclear transport factor 2 like export factor 1 OS=Felis catus GN=NXT1 PE=4 SV=1
 188.0 [0..1] [140..1]
gi|149041165, gi... - gi|27703532|ref|XP_215858.1| PREDICTED: similar to NTF2-related export protein 1 [Rattus norvegicus]...
 187.0 [0..1] [140..1]
NXT1 - NTF2-like export factor 1
CCDS13150.1_1 - null
gi|208968637 - gi|208968637|dbj|BAG74157.1| NTF2-like export factor 1 [synthetic construct]
ENSMMUT000000314... - null, null
gi|114681260 - gi|114681260|ref|XP_001146149.1| PREDICTED: NTF2-like export factor 1 isoform 2 [Pan troglodytes]
 186.0 [0..1] [140..1]
gi|12833806, gi|... - gi|31981051|ref|NP_062735.3| NTF2-related export protein 1 [Mus musculus], gi|12833806|dbj|BAB22670....
 185.0 [0..1] [140..1]
gi|109131896 - gi|109131896|ref|XP_001098951.1| PREDICTED: nuclear transport factor 2-like export factor 2 isoform ...
 182.0 [0..1] [140..56]
NXT2_CHICK - NTF2-related export protein 2 OS=Gallus gallus GN=NXT2 PE=2 SV=1
 180.0 [0..2] [140..3]

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Predicted Domain #1
Region A:
Residues: [1-140] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASVDFKTYV DQACRAAEEF VNVYYTTMDK RRRLLSRLYM GTATLVWNGN AVSGQESLSE  60
   61 FFEMLPSSEF QISVVDCQPV HDDATPSQTT VLVVICGTVK FEGNKQRDFN QNFILTAQAS 120
  121 PSNTVWKIAS DCFRFQDWAS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 47.69897
Match: 1jkgA
Description: NTF2-related export protein 1 (p15)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
nucleocytoplasmic transporter activity 4.11811310168752 bayes_pls_golite062009
protein transporter activity 3.2858716221712 bayes_pls_golite062009
protein transmembrane transporter activity 2.22367856601071 bayes_pls_golite062009
binding 2.08734227778958 bayes_pls_golite062009
RNA binding 1.98983420561953 bayes_pls_golite062009
transporter activity 1.80701285041353 bayes_pls_golite062009
mRNA binding 1.39091688795726 bayes_pls_golite062009
protein binding 1.36536670483288 bayes_pls_golite062009
substrate-specific transporter activity 1.33804818542017 bayes_pls_golite062009
structural constituent of nuclear pore 1.30758304562723 bayes_pls_golite062009
transmembrane transporter activity 1.22102896992563 bayes_pls_golite062009
Ran GTPase binding 1.18290069522408 bayes_pls_golite062009
substrate-specific transmembrane transporter activity 0.890150150408175 bayes_pls_golite062009
P-P-bond-hydrolysis-driven protein transmembrane transporter activity 0.87831089735211 bayes_pls_golite062009
macromolecule transmembrane transporter activity 0.87831089735211 bayes_pls_golite062009
primary active transmembrane transporter activity 0.446562877324676 bayes_pls_golite062009
P-P-bond-hydrolysis-driven transmembrane transporter activity 0.439519001457896 bayes_pls_golite062009
active transmembrane transporter activity 0.430285640125175 bayes_pls_golite062009
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