YRC Public Data Repository - Protein Structure Prediction

Protein:	ATP6_SALCH
Organism:	Salmonella enterica
Length:	271 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ATP6_SALCH.

Description	E-value	Query Range	Subject Range
gi\|148143 - gi\|148143\|gb\|AAA24740.1\| ATPase, a subunit (EC 3.6.1.3)	2.0E-51	[1..271]	[1..271]
gi\|24054300, gi\|... - gi\|24115041\|ref\|NP_709551.1\| F0F1 ATP synthase subunit A [Shigella flexneri 2a str. 301], gi\|2405430... gi\|30043218, gi\|... - gi\|30064957\|ref\|NP_839128.1\| F0F1 ATP synthase subunit A [Shigella flexneri 2a str. 2457T], gi\|30043... ATP6_SHIFL - ATP synthase subunit a OS=Shigella flexneri GN=atpB PE=3 SV=1 ATP6_SHIF8 - ATP synthase subunit a OS=Shigella flexneri serotype 5b (strain 8401) GN=atpB PE=3 SV=1	3.0E-51	[1..271]	[1..271]
ATP6_SHIDS - ATP synthase subunit a OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=atpB PE=3 SV=1	4.0E-51	[1..271]	[1..271]
gi\|253775627, gi... - gi\|254290440\|ref\|YP_003056188.1\| F0F1 ATP synthase subunit A [Escherichia coli BL21(DE3)], gi\|253979... ATP6_ECO55 - ATP synthase subunit a OS=Escherichia coli (strain 55989 / EAEC) GN=atpB PE=3 SV=1 gi\|251787003, gi... - gi\|251787003\|ref\|YP_003001307.1\| hypothetical protein B21_03566 [Escherichia coli BL21], gi\|24237927... ATP6_ECO8A - ATP synthase subunit a OS=Escherichia coli O8 (strain IAI1) GN=atpB PE=3 SV=1 gi\|253975591, gi... - gi\|254163690\|ref\|YP_003046798.1\| F0F1 ATP synthase subunit A [Escherichia coli B str. REL606], gi\|25... gi\|217320685, gi... - gi\|217324464\|ref\|ZP_03440548.1\| ATP synthase F0, A subunit [Escherichia coli O157:H7 str. TW14588], ... ATP6_ECOSE - ATP synthase subunit a OS=Escherichia coli (strain SE11) GN=atpB PE=3 SV=1 gi\|226838922, gi... - gi\|254038957\|ref\|ZP_04873009.1\| ATP synthase F0 [Escherichia sp. 1_1_43], gi\|226838922\|gb\|EEH70949.1... gi\|254595144, gi... - gi\|254795744\|ref\|YP_003080581.1\| F0 sector of membrane-bound ATP synthase, subunit a [Escherichia co... gi\|124530048, gi... - gi\|124530048\|ref\|ZP_01700831.1\| ATP synthase F0, A subunit [Escherichia coli B], gi\|124499453\|gb\|EAY... gi\|194425230, gi... - gi\|194435687\|ref\|ZP_03067790.1\| ATP synthase F0, A subunit [Escherichia coli 101-1], gi\|194425230\|gb... gi\|194420554, gi... - gi\|194431099\|ref\|ZP_03063392.1\| ATP synthase F0, A subunit [Shigella dysenteriae 1012], gi\|194420554... gi\|194428080, gi... - gi\|194428080\|ref\|ZP_03060624.1\| ATP synthase F0, A subunit [Escherichia coli B171], gi\|194413838\|gb\|... gi\|192957452, gi... - gi\|193069128\|ref\|ZP_03050085.1\| ATP synthase F0, A subunit [Escherichia coli E110019], gi\|192957452\|... ATP6_ECO5E - ATP synthase subunit a OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=atpB PE=3 SV=1 gi\|208819680, gi... - gi\|208819680\|ref\|ZP_03260000.1\| ATP synthase F0, A subunit [Escherichia coli O157:H7 str. EC4042], g... gi\|208735413, gi... - gi\|208814136\|ref\|ZP_03255465.1\| ATP synthase F0, A subunit [Escherichia coli O157:H7 str. EC4045], g... gi\|208726296, gi... - gi\|208806495\|ref\|ZP_03248832.1\| ATP synthase F0, A subunit [Escherichia coli O157:H7 str. EC4206], g... ATP6_SHISS - ATP synthase subunit a OS=Shigella sonnei (strain Ss046) GN=atpB PE=3 SV=1 gi\|89110269, gi\|... - gi\|89110269\|ref\|AP_004049.1\| F0 sector of membrane-bound ATP synthase, subunit a [Escherichia coli s... ATP6_ECO57 - ATP synthase subunit a OS=Escherichia coli O157:H7 GN=atpB PE=3 SV=1 EG10099 - F0 sector of membrane-bound ATP synthase, subunit a / ATP synthase subunit a, membrane-bound, F0 sec... gi\|15804338, gi\|... - gi\|15804338\|ref\|NP_290377.1\| F0F1 ATP synthase subunit A [Escherichia coli O157:H7 EDL933], gi\|12518... EG10099 - F0 sector of membrane-bound ATP synthase, subunit a / ATP synthase subunit a, membrane-bound, F0 sec... ATP6_ECOHS - ATP synthase subunit a OS=Escherichia coli O9:H4 (strain HS) GN=atpB PE=3 SV=1 ATP6_ECOLC - ATP synthase subunit a OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=atpB PE=3 SV=1 ATP6_ECO24 - ATP synthase subunit a OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=atpB PE=3 SV=1 gi\|168786581, gi... - gi\|189373447\|gb\|EDU91863.1\| ATP synthase F0, A subunit [Escherichia coli O157:H7 str. EC869], gi\|168... gi\|189002460, gi... - gi\|189002460\|gb\|EDU71446.1\| ATP synthase F0, A subunit [Escherichia coli O157:H7 str. EC4076], gi\|16... gi\|187771397, gi... - gi\|187771397\|gb\|EDU35241.1\| ATP synthase F0, A subunit [Escherichia coli O157:H7 str. EC4196], gi\|16... gi\|192930530, gi... - gi\|193063815\|ref\|ZP_03044902.1\| ATP synthase F0, A subunit [Escherichia coli E22], gi\|192930530\|gb\|E... gi\|188494931, gi... - gi\|188494931\|ref\|ZP_03002201.1\| ATP synthase F0, A subunit [Escherichia coli 53638], gi\|188490130\|gb... ATP6_SHIB3 - ATP synthase subunit a OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=atpB PE=3 SV=1 ATP6_ECODH - ATP synthase subunit a OS=Escherichia coli (strain K12 / DH10B) GN=atpB PE=3 SV=1 ATP6_ECOLI - ATP synthase a chain (EC 3.6.3.14) (ATPase protein 6) - Escherichia coli gi\|168766238, gi... - gi\|189364425\|gb\|EDU82844.1\| ATP synthase F0, A subunit [Escherichia coli O157:H7 str. EC4486], gi\|16... gi\|189358852, gi... - gi\|189358852\|gb\|EDU77271.1\| ATP synthase F0, A subunit [Escherichia coli O157:H7 str. EC4401], gi\|16... gi\|168748532, gi... - gi\|188016847\|gb\|EDU54969.1\| ATP synthase F0, A subunit [Escherichia coli O157:H7 str. EC4113], gi\|16... ATP6_ECOBW - ATP synthase subunit a OS=Escherichia coli (strain K12 / MC4100 / BW2952) GN=atpB PE=3 SV=1	4.0E-51	[1..271]	[1..271]
ATP6_ECOUT - ATP synthase subunit a OS=Escherichia coli (strain UTI89 / UPEC) GN=atpB PE=3 SV=1 gi\|191170564, gi... - gi\|191170564\|ref\|ZP_03032117.1\| ATP synthase F0, A subunit [Escherichia coli F11], gi\|190909372\|gb\|E... ATP6_ECO27 - ATP synthase subunit a OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=atpB PE=3 SV=1 ATP6_ECOSM - ATP synthase subunit a OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=atpB PE=3 SV=1 ATP6_ECOL6 - ATP synthase subunit a OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=atpB PE=3 S... ATP6_ECOK1 - ATP synthase subunit a OS=Escherichia coli O1:K1 / APEC GN=atpB PE=3 SV=1 ATP6_ECOL5 - ATP synthase subunit a OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=atpB PE=3 SV=1 gi\|227839238, gi... - gi\|227883960\|ref\|ZP_04001765.1\| H(+)-transporting two-sector ATPase [Escherichia coli 83972], gi\|227... sp\|B7UMK3\|ATP6_ECO27 - ATP synthase subunit a OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=atpB PE=3 SV=1 gi\|237703539, gi... - gi\|237703539\|ref\|ZP_04534020.1\| ATP synthase subunit A [Escherichia sp. 3_2_53FAA], gi\|226902803\|gb\|... ATP6_ECOLU - ATP synthase subunit a OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=atpB PE=3 SV=1 ATP6_ECOL6 - ATP synthase subunit a OS=Escherichia coli O6 GN=atpB PE=3 SV=1 ATP6_ECO81 - ATP synthase subunit a OS=Escherichia coli O81 (strain ED1a) GN=atpB PE=3 SV=1 ATP6_ECO7I - ATP synthase subunit a OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=atpB PE=3 SV=1 ATP6_ESCF3 - ATP synthase subunit a OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=at... ATP6_ECO45 - ATP synthase subunit a OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=atpB PE=3 SV=1	4.0E-51	[1..271]	[1..271]
gi\|6625697\|gb\|AA... - ATP synthase subunit a [Salmonella typhimurium] gi\|6625697 - gi\|6625697\|gb\|AAF19356.1\|AF188265_2 ATP synthase subunit a [Salmonella typhimurium]	6.0E-51	[1..271]	[1..271]
gi\|15833934, gi\|... - gi\|15833934\|ref\|NP_312707.1\| F0F1 ATP synthase subunit A [Escherichia coli O157:H7 str. Sakai], gi\|1... gi\|25290551 - pir\|\|H91213 membrane-bound ATP synthase subunit a AtpB [imported] - Escherichia coli (strain O157:H7... gi\|15833934, gi\|... - gi\|15833934\|ref\|NP_312707.1\| ATP synthase subunit A [Escherichia coli O157:H7], gi\|13364155\|dbj\|BAB3...	9.0E-51	[1..271]	[1..271]
gi\|485452, gi\|13903 - pir\|\|S28918 H+-transporting two-sector ATPase (EC 3.6.3.14) protein 6 - maize mitochondrion, gi\|1390...	2.0E-50	[21..271]	[163..414]
gi\|629605, gi\|515963 - pir\|\|S42658 H+-transporting two-sector ATPase (EC 3.6.3.14) protein 6 precursor - radish mitochondri...	4.0E-50	[21..271]	[176..427]

Back

Predicted Domain #1

Region A:
Residues: [1-65]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASENMTPQE YIGHHLNNLQ LDLRTFSLVD PQNPPATFWT LNIDSMFFSV VLGLLFLVMF  60
   61 RSVAK

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [66-271]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KATSGVPGKF QTAIELIVGF VHGSVKDMYH GKSKLIAPLA LTIFVWVFLM NLMDLLPIDL  60
   61 LPYIAEHWLG LPATRVVPSA DVNITLSMAL GVFILILFYS IKMKGIGGFA KELTLQPFNH 120
  121 WAFIPVNLIL EGVSLLSKPV SLGLRLFGNM YAGELIFILI AGLLPWWSQW ILNVPWAIFH 180
  181 ILIITLQAFI FMVLTIVYLS MASEEH

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	30.522879
Match:	1c17M
Description:	F1F0 ATP synthase subunit A
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
hydrogen ion transporting ATP synthase activity, rotational mechanism	14.916062574431	bayes_pls_golite062009
hydrogen ion transmembrane transporter activity	13.3765277511271	bayes_pls_golite062009
monovalent inorganic cation transmembrane transporter activity	11.6266555949852	bayes_pls_golite062009
inorganic cation transmembrane transporter activity	10.5141571800158	bayes_pls_golite062009
cation transmembrane transporter activity	6.7755175807552	bayes_pls_golite062009
ion transmembrane transporter activity	6.66886754588748	bayes_pls_golite062009
substrate-specific transmembrane transporter activity	6.24164033661356	bayes_pls_golite062009
proton-transporting ATPase activity, rotational mechanism	5.34968915140418	bayes_pls_golite062009
transporter activity	4.44683838532142	bayes_pls_golite062009
substrate-specific transporter activity	4.37473908570954	bayes_pls_golite062009
transmembrane transporter activity	4.36056336888635	bayes_pls_golite062009
cation-transporting ATPase activity	3.33662712450334	bayes_pls_golite062009
ATPase activity, coupled to transmembrane movement of ions	1.11865103919948	bayes_pls_golite062009
primary active transmembrane transporter activity	0.517601509369888	bayes_pls_golite062009
active transmembrane transporter activity	0.511311810386796	bayes_pls_golite062009
P-P-bond-hydrolysis-driven transmembrane transporter activity	0.510137962484563	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances	0.476924701765357	bayes_pls_golite062009
ATPase activity, coupled to movement of substances	0.473395661531507	bayes_pls_golite062009
ATPase activity, coupled to transmembrane movement of substances	0.473285892250811	bayes_pls_golite062009
catalytic activity	0.276917867171685	bayes_pls_golite062009
nucleoside-triphosphatase activity	0.242742762516199	bayes_pls_golite062009
pyrophosphatase activity	0.201337507209354	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides	0.191294406773539	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	0.188721983770471	bayes_pls_golite062009
ATPase activity, coupled	0.110491424400621	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: