YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: GTE7_ARATH
Organism: Arabidopsis thaliana
Length: 590 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GTE7_ARATH.

Description E-value Query
Range
Subject
Range
gi|8978291 - gi|8978291|dbj|BAA98182.1| unnamed protein product [Arabidopsis thaliana]
390.0 [0..1] [590..56]

Back

Predicted Domain #1
Region A:
Residues: [1-139]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPAVFATLN EPSYQEQCGA VFMRKFTNQS VTENTNNLPL FNPNPNPNFE RSNSSKQCDD  60
   61 SSEFGSYATF NLAGYTSSQL RELKKRFTSE LKQIRILRER IESGTFETQQ GYTIPEVPAV 120
  121 RSAPLNNFTG EKNDLGPKK

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [140-279]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KKQKKNVSGL KRSNQFGPSD PESEKLLAGM LNTCSQILVK LMKHKWAWVF NTPVDVVGLG  60
   61 LHDYHQVVKK PMDLGTVKLN LDKGFYVSPI DFATDVRLTF DNAMTYNPKG QDVYFMADKL 120
  121 LDHFDGMFNP AFKKFEAQQL 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 36.0
Match: 2dvvA
Description: No description for 2dvvA was found.

Predicted Domain #3
Region A:
Residues: [280-358]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KLTGSSSRPE PDFKPDFKQR QWNQNPPMVA NPRKGTEQIS IAKKLDSVKP PQPTLPPQLV  60
   61 EPSRVQSPSP PPPPPVIQP

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [359-502]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ELPQPQPPPP QLEIEVEAPP DVSEVSKGRK GKLPKPKAKD PNKRLMTMEE KSKLGMNLQD  60
   61 LPPEKLGQLL QILRKRNGHL AQDGDEIELD IEAVDNETLW ELDRFVTNYK KMASKIKRQG 120
  121 FIRNVSTPPR NMASVAEMGS AEKR

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #5
Region A:
Residues: [503-590]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TRRGDAGEED VDIGEDIPIE DYPSVEIERD GTAVAAAASS GSSSSGSSSS SGGSSSSSDS  60
   61 GSGGSSSGSD SDADSVQSPF VEAKEAQC

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle