YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|42518278, gi\|...
Organism:	Lactobacillus johnsonii NCC 533
Length:	107 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|42518278, gi|....

Description	E-value	Query Range	Subject Range
gi\|29343058, gi\|... - gi\|29375597\|ref\|NP_814751.1\| PTS system, IIB component [Enterococcus faecalis V583], gi\|29343058\|gb\|... gi\|229305979, gi... - gi\|229548958\|ref\|ZP_04437683.1\| protein-N(pi)-phosphohistidine--sugar phosphotransferase [Enterococc... gi\|238831372, gi... - gi\|238855992\|ref\|ZP_04646274.1\| lichenan-specific phosphotransferase enzyme iib component [Enterococ...	149.0	[0..1]	[105..1]
gi\|69245658, gi\|... - gi\|69245658\|ref\|ZP_00603571.1\| Phosphotransferase system, lactose/cellobiose-specific IIB subunit [E... gi\|48825537 - ref\|ZP_00286783.1\| COG1440: Phosphotransferase system cellobiose-specific component IIB [Enterococcu...	145.0	[0..1]	[105..1]
gi\|23003440 - gi\|23003440\|ref\|ZP_00047103.1\| COG1440: Phosphotransferase system cellobiose-specific component IIB ... gi\|226820452 - gi\|226820452\|ref\|ZP_03809571.1\| cellobiose-specific PTS system IIB component [Lactobacillus gasseri ... gi\|238834531, gi... - gi\|238852837\|ref\|ZP_04643242.1\| PTS system, lactose/cellobiose family IIB component [Lactobacillus g... gi\|116094453, gi... - gi\|23003440\|ref\|ZP_00047103.1\| hypothetical protein Lgas_03001540 [Lactobacillus gasseri ATCC 33323]...	142.0	[0..1]	[107..1]
PTJB_BACSU, PTCB... - Lichenan-specific phosphotransferase enzyme IIB component OS=Bacillus subtilis GN=licB PE=1 SV=1, (P... PTJB_BACSU - Lichenan-specific phosphotransferase enzyme IIB component OS=Bacillus subtilis (strain 168) GN=licB ... gi\|221321063 - gi\|221321063\|ref\|ZP_03602357.1\| phosphotransferase system (PTS) lichenan-specific enzyme IIB compone... gi\|221325348 - gi\|221325348\|ref\|ZP_03606642.1\| phosphotransferase system (PTS) lichenan-specific enzyme IIB compone... gi\|221316152 - gi\|221316152\|ref\|ZP_03597957.1\| phosphotransferase system (PTS) lichenan-specific enzyme IIB compone...	140.0	[0..4]	[103..1]
gi\|78609608, gi\|... - gi\|81427967\|ref\|YP_394966.1\| putative cellobiose-specific phosphotransferase system, enzyme IIB [Lac...	140.0	[0..1]	[105..1]
gi\|46908544, gi\|... - gi\|46908544\|ref\|YP_014933.1\| PTS system, cellobiose-specific, IIB component [Listeria monocytogenes ...	139.0	[0..3]	[106..1]
gi\|89086742, gi\|... - gi\|89098497\|ref\|ZP_01171380.1\| PTS system, cellobiose-specific IIB component [Bacillus sp. NRRL B-14...	138.0	[0..2]	[107..18]

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Predicted Domain #1

Region A:
Residues: [1-107]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADKTIMLAC SAGMSTSLLV SKMQNAAKEK GKDYKIFATA ASGIQDEIDK EHPDVLMLGP  60
   61 QVQYMEDSVK KITDEAGIPL AVINMQDYGM MNGEHVLETA QELMGDK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	26.045757
Match:	1h9cA
Description:	Enzyme IIB-cellobiose
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
protein-N(PI)-phosphohistidine-sugar phosphotransferase activity	5.08041453921791	bayes_pls_golite062009
carbohydrate transmembrane transporter activity	4.49138214292642	bayes_pls_golite062009
glucoside transmembrane transporter activity	1.83892097143526	bayes_pls_golite062009
sugar transmembrane transporter activity	1.77053981674308	bayes_pls_golite062009
transporter activity	1.6837050020547	bayes_pls_golite062009
transmembrane transporter activity	1.5685227361887	bayes_pls_golite062009
substrate-specific transporter activity	1.32293422112884	bayes_pls_golite062009
substrate-specific transmembrane transporter activity	1.217268678967	bayes_pls_golite062009
active transmembrane transporter activity	1.12964417923438	bayes_pls_golite062009
monosaccharide transmembrane transporter activity	0.71593290802554	bayes_pls_golite062009
catalytic activity	0.676259875978821	bayes_pls_golite062009
beta-glucoside transmembrane transporter activity	0.50967675887857	bayes_pls_golite062009
binding	0.472595683811139	bayes_pls_golite062009
phosphotransferase activity, alcohol group as acceptor	0.37663629577414	bayes_pls_golite062009
fructose transmembrane transporter activity	0.225562559709031	bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups	0.0296784994545702	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: