YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|42518315, gi\|...
Organism:	Lactobacillus johnsonii NCC 533
Length:	99 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|42518315, gi|....

Description	E-value	Query Range	Subject Range
gi\|45723560, gi\|... - gi\|54307194\|ref\|YP_133724.1\| regulator of arsenical resistance [Lactobacillus plantarum WCFS1], gi\|4... gi\|45723560 - gi\|45723560\|emb\|CAG17841.1\| regulator of arsenical resistance [Lactobacillus plantarum WCFS1]	108.0	[0..1]	[98..1]
gi\|18450318, gi\|... - gi\|18450318\|ref\|NP_569189.1\| hypothetical protein pli0036 [Listeria innocua Clip11262], gi\|16415819\|... gi\|18450318 - gi\|18450318\|ref\|NP_569189.1\| hypothetical protein pli0036 [Listeria innocua Clip11262]	108.0	[0..1]	[97..1]
gi\|227185552, gi... - gi\|227544470\|ref\|ZP_03974519.1\| transcriptional regulator ArsR [Lactobacillus reuteri CF48-3A], gi\|2... gi\|227956038, gi... - gi\|227976062\|ref\|ZP_04024322.1\| ArsR family transcriptional regulator [Lactobacillus reuteri SD2112]... gi\|179366408, gi... - gi\|183219421\|ref\|YP_001840823.1\| transcriptional regulator ArsR [Lactobacillus reuteri], gi\|17936640...	107.0	[0..1]	[99..1]
gi\|89209648, gi\|... - gi\|89209648\|ref\|ZP_01188043.1\| regulatory protein, ArsR [Halothermothrix orenii H 168], gi\|89160717\|...	104.0	[0..3]	[91..44]
gi\|89336824, gi\|... - gi\|89897376\|ref\|YP_520863.1\| hypothetical protein DSY4630 [Desulfitobacterium hafniense Y51], gi\|893...	103.0	[0..3]	[90..37]
gi\|242229937, gi... - gi\|242258539\|ref\|ZP_04803326.1\| transcriptional regulator, ArsR family [Thermoanaerobacter sp. X513]... gi\|166854047, gi... - gi\|167039807\|ref\|YP_001662792.1\| regulatory protein, ArsR [Thermoanaerobacter sp. X514], gi\|16685404...	102.0	[0..5]	[90..36]
gi\|149903442, gi... - gi\|82748000\|ref\|ZP_00910491.1\| regulatory protein, ArsR [Clostridium beijerincki NCIMB 8052], gi\|827...	102.0	[0..1]	[98..3]
gi\|20517474, gi\|... - gi\|20808823\|ref\|NP_623994.1\| transcriptional regulator [Thermoanaerobacter tengcongensis MB4], gi\|20... gi\|20808823 - gi\|20808823\|ref\|NP_623994.1\| predicted Transcriptional regulator [Thermoanaerobacter tengcongensis M...	102.0	[0..5]	[90..36]
gi\|67916590, gi\|... - gi\|67916590\|ref\|ZP_00510294.1\| regulatory protein, ArsR [Clostridium thermocellum ATCC 27405], gi\|67...	102.0	[0..5]	[92..51]
gi\|110673335, gi... - gi\|110798688\|ref\|YP_696978.1\| putative cadmium resistance transcriptional regulator CadC [Clostridiu... gi\|169347007, gi... - gi\|169347007\|ref\|ZP_02865949.1\| putative cadmium resistance transcriptional regulator CadC [Clostrid... gi\|177909258, gi... - gi\|182625570\|ref\|ZP_02953341.1\| putative cadmium resistance transcriptional regulator CadC [Clostrid... gi\|170663275, gi... - gi\|170663275\|gb\|EDT15958.1\| putative cadmium resistance transcriptional regulator CadC [Clostridium ... gi\|170711589, gi... - gi\|170711589\|gb\|EDT23771.1\| putative cadmium resistance transcriptional regulator CadC [Clostridium ... gi\|170715260, gi... - gi\|170715260\|gb\|EDT27442.1\| putative cadmium resistance transcriptional regulator CadC [Clostridium ... gi\|18145969, gi\|... - gi\|18311286\|ref\|NP_563220.1\| transcriptional regulator [Clostridium perfringens str. 13], gi\|1814596... gi\|182381216, gi... - gi\|182381216\|gb\|EDT78695.1\| putative cadmium resistance transcriptional regulator CadC [Clostridium ...	101.0	[0..5]	[90..34]

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Predicted Domain #1

Region A:
Residues: [1-99]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDYQELANLL KVVAEPNRLK ILNLLSCGEM CACDILDHFN FTQPTLSHHM KVLEDKGLIL  60
   61 VQKRGKWHYY SLNPEKSTVI INGLTEVLSN SENCICKDA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	16.522879
Match:	2jscA
Description:	No description for 2jscA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits