YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|41583052, gi\|...
Organism:	Lactobacillus johnsonii NCC 533
Length:	380 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|41583052, gi|....

Description	E-value	Query Range	Subject Range
gi\|23003229 - gi\|23003229\|ref\|ZP_00046896.1\| COG0472: UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-ac... gi\|226820658 - gi\|226820658\|ref\|ZP_03809777.1\| UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylgluc... gi\|116095546, gi... - gi\|23003229\|ref\|ZP_00046896.1\| hypothetical protein Lgas_03001201 [Lactobacillus gasseri ATCC 33323]...	317.0	[0..1]	[380..1]
gi\|58336990, gi\|... - gi\|58336990\|ref\|YP_193575.1\| undecaprenyl-phosphaten-acetyl-glucosaminyltransfera se [Lactobacillus ... gi\|227868436, gi... - gi\|227903549\|ref\|ZP_04021354.1\| UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosp...	303.0	[0..1]	[376..1]
gi\|104773711, gi... - gi\|104773711\|ref\|YP_618691.1\| putative undecaprenyl-phosphate N-acetyl-glucosaminyl transferase [Lac... gi\|12642648 - gi\|12642648\|gb\|AAK00329.1\|AF320250_2 RgpG [Lactobacillus delbrueckii] gi\|116093023, gi... - gi\|62515557\|ref\|ZP_00386961.1\| COG0472: UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-ac...	299.0	[0..1]	[376..1]
gi\|116108317, gi... - gi\|62464289\|ref\|ZP_00383584.1\| COG0472: UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-ac...	282.0	[0..2]	[377..12]
gi\|25401908 - pir\|\|B86849 polysacharide biosynthesis protein [imported] - Lactococcus lactis subsp. lactis (strain... gi\|15673776, gi\|... - gi\|15673776\|ref\|NP_267951.1\| polysacharide biosynthesis protein [Lactococcus lactis subsp. lactis Il...	276.0	[0..2]	[363..12]
gi\|116492226, gi... - gi\|48870042\|ref\|ZP_00322773.1\| COG0472: UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-ac...	273.0	[0..2]	[356..3]
gi\|116098618, gi... - gi\|116333271\|ref\|YP_794798.1\| UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucos...	272.0	[0..2]	[357..3]
gi\|227867062, gi... - gi\|227891188\|ref\|ZP_04008993.1\| undecaprenyl-phosphate alpha-N-acetylglucosaminephosphotransferase [... gi\|90962183, gi\|... - gi\|90962183\|ref\|YP_536099.1\| undecaprenyl-phosphate alpha-N-acetylglucosaminephosphotransferase [Lac...	263.0	[0..1]	[354..1]
gi\|29376706, gi\|... - gi\|29376706\|ref\|NP_815860.1\| glycosyl transferase, group 4 family protein [Enterococcus faecalis V58... gi\|238857701, gi... - gi\|238857701\|ref\|ZP_04647931.1\| glycosyl transferase, group 4 family protein [Enterococcus faecalis ... gi\|229549523, gi... - gi\|229549523\|ref\|ZP_04438248.1\| possible phospho-N-acetylmuramoyl-pentapeptide-transferase [Enteroco... gi\|229545288, gi... - gi\|229545288\|ref\|ZP_04434013.1\| possible phospho-N-acetylmuramoyl-pentapeptide-transferase [Enteroco...	261.0	[0..1]	[376..5]
gi\|78609744, gi\|... - gi\|81428103\|ref\|YP_395102.1\| undecaprenyl-phosphate N-acetyl-glucosaminyl transferase [Lactobacillus...	261.0	[0..1]	[344..4]

Back

Predicted Domain #1

Region A:
Residues: [1-255]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFQTIVKIFL LVIITAAITP FIRKLAFVLG AVDNPNARRI NKKPMPTIGG LAIFVAFNIG  60
   61 EFVLLRKDFP THELFSVLLA SSVIILTGLI DDILELKPRQ KMFGIFVASL VVYFLAGIKV 120
  121 RELSLPFLGH IQLGWWSFPL TIFWILALTN AVNLIDGLDG LATGVTLISL VTMGIVGFFF 180
  181 LKSWQHYVPI MCIMLAACLL GFLPYNFHPA KIFLGDTGAL YIGFMISVLS LKGLKNVTFV 240
  241 SLLVPILILG VPITD

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	47.040959
Match:	PF00953.12
Description:	No description for PF00953.12 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [256-380]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TVYAMIRRKL NKKNISQADK HHLHHQLMRM GLSHRQTVLA IYGISLIFSF VSLLSLVSPR  60
   61 WGIWLLILGL LFAVELFVET IGLLGEKYKP LLHFLQHTIN KMERADPEVK VRRLNKKNTN 120
  121 KKDLR

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits