YRC Public Data Repository - Protein Structure Prediction

Protein:	RS16_LACJO
Organism:	Lactobacillus johnsonii NCC 533
Length:	90 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RS16_LACJO.

Description	E-value	Query Range	Subject Range
RS16_LEUMM - 30S ribosomal protein S16 OS=Leuconostoc mesenteroides subsp. mesenteroides (strain ATCC 8293 / NCDO...	147.0	[0..1]	[87..1]
RS16_LACBA - 30S ribosomal protein S16 OS=Lactobacillus brevis (strain ATCC 367 / JCM 1170) GN=rpsP PE=3 SV=1	147.0	[0..1]	[90..1]
RS16_LACPL - 30S ribosomal protein S16 OS=Lactobacillus plantarum GN=rpsP PE=3 SV=1 gi\|254556542, gi... - gi\|254556542\|ref\|YP_003062959.1\| 30S ribosomal protein S16 [Lactobacillus plantarum JDM1], gi\|254045... gi\|227895202, gi... - gi\|227895202\|ref\|ZP_04013007.1\| 30S ribosomal protein S16 [Lactobacillus plantarum subsp. plantarum ... RS16_LACPL - 30S ribosomal protein S16 OS=Lactobacillus plantarum (strain ATCC BAA-793 / NCIMB 8826 / WCFS1) GN=r...	146.0	[0..1]	[90..1]
gi\|254997576 - gi\|254997576\|dbj\|BAH88177.1\| 30S ribosomal protein S16 [Streptococcus mutans NN2025] RS16_STRMU - 30S ribosomal protein S16 OS=Streptococcus mutans GN=rpsP PE=3 SV=1 RS16_STRMU - 30S ribosomal protein S16 OS=Streptococcus mutans serotype c (strain ATCC 700610 / UA159) GN=rpsP PE...	145.0	[0..1]	[90..1]
gi\|228736038, gi... - gi\|229025285\|ref\|ZP_04181705.1\| 30S ribosomal protein S16 [Bacillus cereus AH1272], gi\|228736038\|gb\|... gi\|228729763, gi... - gi\|229031474\|ref\|ZP_04187474.1\| 30S ribosomal protein S16 [Bacillus cereus AH1271], gi\|228729763\|gb\|... gi\|229006120, gi... - gi\|229006120\|ref\|ZP_04163808.1\| 30S ribosomal protein S16 [Bacillus mycoides Rock1-4], gi\|228755196\|... gi\|228742279, gi... - gi\|229019039\|ref\|ZP_04175880.1\| 30S ribosomal protein S16 [Bacillus cereus AH1273], gi\|228742279\|gb\|... gi\|228711796, gi... - gi\|229071342\|ref\|ZP_04204565.1\| 30S ribosomal protein S16 [Bacillus cereus F65185], gi\|228711796\|gb\|... gi\|228702143, gi... - gi\|229081099\|ref\|ZP_04213609.1\| 30S ribosomal protein S16 [Bacillus cereus Rock4-2], gi\|228702143\|gb... gi\|229047531, gi... - gi\|229047531\|ref\|ZP_04193121.1\| 30S ribosomal protein S16 [Bacillus cereus AH676], gi\|228723778\|gb\|E... gi\|229061447, gi... - gi\|229061447\|ref\|ZP_04198792.1\| 30S ribosomal protein S16 [Bacillus cereus AH603], gi\|228717870\|gb\|E... gi\|229104406, gi... - gi\|229104406\|ref\|ZP_04235075.1\| 30S ribosomal protein S16 [Bacillus cereus Rock3-28], gi\|228679104\|g... gi\|228672091, gi... - gi\|229111315\|ref\|ZP_04240868.1\| 30S ribosomal protein S16 [Bacillus cereus Rock1-15], gi\|228672091\|g... gi\|228690508, gi... - gi\|229092886\|ref\|ZP_04224020.1\| 30S ribosomal protein S16 [Bacillus cereus Rock3-42], gi\|228690508\|g... gi\|229098313, gi... - gi\|229098313\|ref\|ZP_04229260.1\| 30S ribosomal protein S16 [Bacillus cereus Rock3-29], gi\|228685211\|g... gi\|228654357, gi... - gi\|229129120\|ref\|ZP_04258093.1\| 30S ribosomal protein S16 [Bacillus cereus BDRD-Cer4], gi\|228654357\|... gi\|228648698, gi... - gi\|229134652\|ref\|ZP_04263461.1\| 30S ribosomal protein S16 [Bacillus cereus BDRD-ST196], gi\|228648698... gi\|228666230, gi... - gi\|229117330\|ref\|ZP_04246708.1\| 30S ribosomal protein S16 [Bacillus cereus Rock1-3], gi\|228666230\|gb... gi\|228660134, gi... - gi\|229123358\|ref\|ZP_04252562.1\| 30S ribosomal protein S16 [Bacillus cereus 95/8201], gi\|228660134\|gb... gi\|229152043, gi... - gi\|229152043\|ref\|ZP_04280238.1\| 30S ribosomal protein S16 [Bacillus cereus m1550], gi\|228631392\|gb\|E... gi\|228626147, gi... - gi\|229157420\|ref\|ZP_04285498.1\| 30S ribosomal protein S16 [Bacillus cereus ATCC 4342], gi\|228626147\|... gi\|229140487, gi... - gi\|229140487\|ref\|ZP_04269042.1\| 30S ribosomal protein S16 [Bacillus cereus BDRD-ST26], gi\|228643048\|... gi\|228637048, gi... - gi\|229146415\|ref\|ZP_04274786.1\| 30S ribosomal protein S16 [Bacillus cereus BDRD-ST24], gi\|228637048\|... gi\|229174510, gi... - gi\|229174510\|ref\|ZP_04302042.1\| 30S ribosomal protein S16 [Bacillus cereus MM3], gi\|228609070\|gb\|EEK... gi\|229180120, gi... - gi\|229180120\|ref\|ZP_04307464.1\| 30S ribosomal protein S16 [Bacillus cereus 172560W], gi\|228603329\|gb... gi\|229162780, gi... - gi\|229162780\|ref\|ZP_04290737.1\| 30S ribosomal protein S16 [Bacillus cereus R309803], gi\|228620662\|gb... gi\|228614989, gi... - gi\|229168583\|ref\|ZP_04296306.1\| 30S ribosomal protein S16 [Bacillus cereus AH621], gi\|228614989\|gb\|E... gi\|229197954, gi... - gi\|229197954\|ref\|ZP_04324669.1\| 30S ribosomal protein S16 [Bacillus cereus m1293], gi\|228585533\|gb\|E... RS16_BACAA - 30S ribosomal protein S16 OS=Bacillus anthracis (strain A0248) GN=rpsP PE=3 SV=1 gi\|228597260, gi... - gi\|229186084\|ref\|ZP_04313253.1\| 30S ribosomal protein S16 [Bacillus cereus BGSC 6E1], gi\|228597260\|g... RS16_BACAH - 30S ribosomal protein S16 OS=Bacillus thuringiensis (strain Al Hakam) GN=rpsP PE=3 SV=1 gi\|229192013, gi... - gi\|229192013\|ref\|ZP_04318983.1\| 30S ribosomal protein S16 [Bacillus cereus ATCC 10876], gi\|228591564... gi\|254751177 - gi\|254751177\|ref\|ZP_05203216.1\| 30S ribosomal protein S16 [Bacillus anthracis str. Vollum] gi\|254756725 - gi\|254756725\|ref\|ZP_05208754.1\| 30S ribosomal protein S16 [Bacillus anthracis str. Australia 94] gi\|254683448 - gi\|254683448\|ref\|ZP_05147308.1\| 30S ribosomal protein S16 [Bacillus anthracis str. CNEVA-9066] gi\|254735882 - gi\|254735882\|ref\|ZP_05193588.1\| 30S ribosomal protein S16 [Bacillus anthracis str. Western North Ame... RS16_BACCQ - 30S ribosomal protein S16 OS=Bacillus cereus (strain Q1) GN=rpsP PE=3 SV=1 RS16_BACAC - 30S ribosomal protein S16 OS=Bacillus anthracis (strain CDC 684 / NRRL 3495) GN=rpsP PE=3 SV=1 gi\|228916481, gi... - gi\|228916481\|ref\|ZP_04080047.1\| 30S ribosomal protein S16 [Bacillus thuringiensis serovar pulsiensis... RS16_BACC3 - 30S ribosomal protein S16 OS=Bacillus cereus (strain 03BB102) GN=rpsP PE=3 SV=1 gi\|228935158, gi... - gi\|228935158\|ref\|ZP_04097985.1\| 30S ribosomal protein S16 [Bacillus thuringiensis serovar andalousie... gi\|228818768, gi... - gi\|228940932\|ref\|ZP_04103491.1\| 30S ribosomal protein S16 [Bacillus thuringiensis serovar berliner A... gi\|228837027, gi... - gi\|228922598\|ref\|ZP_04085898.1\| 30S ribosomal protein S16 [Bacillus thuringiensis serovar huazhongen... gi\|228830699, gi... - gi\|228928892\|ref\|ZP_04091924.1\| 30S ribosomal protein S16 [Bacillus thuringiensis serovar pondicheri... gi\|228960060, gi... - gi\|228960060\|ref\|ZP_04121724.1\| 30S ribosomal protein S16 [Bacillus thuringiensis serovar pakistani ... gi\|228785886, gi... - gi\|228973861\|ref\|ZP_04134437.1\| 30S ribosomal protein S16 [Bacillus thuringiensis serovar thuringien... gi\|228812083, gi... - gi\|228947563\|ref\|ZP_04109853.1\| 30S ribosomal protein S16 [Bacillus thuringiensis serovar monterrey ... gi\|228954120, gi... - gi\|228954120\|ref\|ZP_04116149.1\| 30S ribosomal protein S16 [Bacillus thuringiensis serovar kurstaki s... gi\|228992572, gi... - gi\|228992572\|ref\|ZP_04152499.1\| 30S ribosomal protein S16 [Bacillus pseudomycoides DSM 12442], gi\|22... gi\|228761088, gi... - gi\|228998620\|ref\|ZP_04158207.1\| 30S ribosomal protein S16 [Bacillus mycoides Rock3-17], gi\|228761088... gi\|228980451, gi... - gi\|228980451\|ref\|ZP_04140761.1\| 30S ribosomal protein S16 [Bacillus thuringiensis Bt407], gi\|2287792... gi\|228772765, gi... - gi\|228986987\|ref\|ZP_04147113.1\| 30S ribosomal protein S16 [Bacillus thuringiensis serovar tochigiens... RS16_BACAN - 30S ribosomal protein S16 OS=Bacillus anthracis GN=rpsP PE=3 SV=1 RS16_BACC1 - 30S ribosomal protein S16 OS=Bacillus cereus (strain ATCC 10987 / NRS 248) GN=rpsP PE=3 SV=1 RS16_BACCR - 30S ribosomal protein S16 OS=Bacillus cereus (strain ATCC 14579 / DSM 31 / JCM 2152 / NBRC 15305 / N... RS16_BACC7 - 30S ribosomal protein S16 OS=Bacillus cereus (strain AH187) GN=rpsP PE=3 SV=1 RS16_BACWK - 30S ribosomal protein S16 OS=Bacillus weihenstephanensis (strain KBAB4) GN=rpsP PE=3 SV=1 RS16_BACC0 - 30S ribosomal protein S16 OS=Bacillus cereus (strain AH820) GN=rpsP PE=3 SV=1 RS16_BACC4 - 30S ribosomal protein S16 OS=Bacillus cereus (strain B4264) GN=rpsP PE=3 SV=1 RS16_BACHK - 30S ribosomal protein S16 OS=Bacillus thuringiensis subsp. konkukian (strain 97-27) GN=rpsP PE=3 SV=... RS16_BACCZ - 30S ribosomal protein S16 OS=Bacillus cereus (strain ZK / E33L) GN=rpsP PE=3 SV=1 gi\|47529272, gi\|... - gi\|47529272\|ref\|YP_020621.1\| 30S ribosomal protein S16 [Bacillus anthracis str. 'Ames Ancestor'], gi... gi\|49186694, gi\|... - gi\|49186694\|ref\|YP_029946.1\| 30S ribosomal protein S16 [Bacillus anthracis str. Sterne], gi\|49180621... gi\|30263847, gi\|... - gi\|30263847\|ref\|NP_846224.1\| 30S ribosomal protein S16 [Bacillus anthracis str. Ames], gi\|30258491\|g... RS16_BACHK - 30S ribosomal protein S16 OS=Bacillus thuringiensis subsp. konkukian GN=rpsP PE=3 SV=1	144.0	[0..1]	[90..1]
RS16_PEDPA - 30S ribosomal protein S16 OS=Pediococcus pentosaceus (strain ATCC 25745 / 183-1w) GN=rpsP PE=3 SV=1	144.0	[0..1]	[90..1]
gi\|65321172, gi\|... - gi\|65321172\|ref\|ZP_00394131.1\| COG0228: Ribosomal protein S16 [Bacillus anthracis str. A2012], ref\|N...	144.0	[0..1]	[90..1]
RS16_LACLS - 30S ribosomal protein S16 OS=Lactococcus lactis subsp. cremoris (strain SK11) GN=rpsP PE=3 SV=1	143.0	[0..1]	[90..1]
gi\|220708401, gi... - gi\|221087515\|ref\|ZP_03557052.1\| ribosomal protein S16 [Geobacillus sp. Y412MC61], gi\|220708401\|gb\|EE... gi\|229498130, gi... - gi\|229498130\|ref\|ZP_04391827.1\| ribosomal protein S16 [Geobacillus sp. Y412MC52], gi\|229330820\|gb\|EE... RS16_GEOKA - 30S ribosomal protein S16 OS=Geobacillus kaustophilus (strain HTA426) GN=rpsP PE=3 SV=1 RS16_GEOKA - 30S ribosomal protein S16 OS=Geobacillus kaustophilus GN=rpsP PE=3 SV=1	142.0	[0..1]	[90..1]
RS16_BACLD - 30S ribosomal protein S16 OS=Bacillus licheniformis (strain ATCC 14580 / DSM 13 / JCM 2505 / NBRC 12...	142.0	[0..1]	[90..1]

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Predicted Domain #1

Region A:
Residues: [1-90]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVKIRMRRM GSKRKPFYRI VVADSRMPRD GRFIEEVGYY NPLTNPDEVK LEEDKIFEWL  60
   61 EKGAQPSDTV RSLLSKAGLM TRYHDAKYGK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	26.0
Match:	2uu9P
Description:	No description for 2uu9P was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits