YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|42519467, gi\|...
Organism:	Lactobacillus johnsonii NCC 533
Length:	301 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|42519467, gi|....

Description	E-value	Query Range	Subject Range
gi\|23002796 - gi\|23002796\|ref\|ZP_00046469.1\| COG1210: UDP-glucose pyrophosphorylase [Lactobacillus gasseri] gi\|227521298, gi... - gi\|227521298\|ref\|ZP_03951347.1\| UTP--glucose-1-phosphate uridylyltransferase [Lactobacillus gasseri ... gi\|116629360, gi... - gi\|23002796\|ref\|ZP_00046469.1\| hypothetical protein Lgas_03000721 [Lactobacillus gasseri ATCC 33323]...	283.0	[0..1]	[301..1]
gi\|227903507, gi... - gi\|227903507\|ref\|ZP_04021312.1\| UTP-glucose-1-phosphate uridylyltransferase [Lactobacillus acidophil... gi\|58254267, gi\|... - gi\|58336950\|ref\|YP_193535.1\| UTP-glucose-1-phosphate uridylyltransferase [Lactobacillus acidophilus ...	277.0	[0..1]	[300..1]
gi\|227855158, gi... - gi\|227896521\|ref\|ZP_04014326.1\| UTP--glucose-1-phosphate uridylyltransferase [Lactobacillus plantaru... gi\|28377616, gi\|... - gi\|28377616\|ref\|NP_784508.1\| UTP--glucose-1-phosphate uridylyltransferase [Lactobacillus plantarum W... gi\|254555794, gi... - gi\|254555794\|ref\|YP_003062211.1\| UTP-glucose-1-phosphate uridylyltransferase [Lactobacillus plantaru...	261.0	[0..2]	[300..3]
gi\|29376295, gi\|... - gi\|29376295\|ref\|NP_815449.1\| UTP-glucose-1-phosphate uridylyltransferase [Enterococcus faecalis V583... gi\|227073623, gi... - gi\|227518934\|ref\|ZP_03948983.1\| UTP-glucose-1-phosphate uridylyltransferase [Enterococcus faecalis T... gi\|238856809, gi... - gi\|238856809\|ref\|ZP_04647069.1\| UTP-glucose-1-phosphate uridylyltransferase [Enterococcus faecalis T... gi\|229549833, gi... - gi\|229549833\|ref\|ZP_04438558.1\| UTP-glucose-1-phosphate uridylyltransferase [Enterococcus faecalis A... gi\|229545642, gi... - gi\|229545642\|ref\|ZP_04434367.1\| UTP-glucose-1-phosphate uridylyltransferase [Enterococcus faecalis T... gi\|227553553, gi... - gi\|227553553\|ref\|ZP_03983602.1\| UTP-glucose-1-phosphate uridylyltransferase [Enterococcus faecalis H...	261.0	[0..1]	[300..1]
gi\|90962242, gi\|... - gi\|90962242\|ref\|YP_536158.1\| UTP--glucose-1-phosphate uridylyltransferase [Lactobacillus salivarius ... gi\|227892345, gi... - gi\|227892345\|ref\|ZP_04010150.1\| UTP--glucose-1-phosphate uridylyltransferase [Lactobacillus salivari...	261.0	[0..1]	[292..1]
gi\|25010514, gi\|... - gi\|25010514\|ref\|NP_734909.1\| UTP-glucose-1-phosphate uridylyltransferase [Streptococcus agalactiae N... gi\|22536589, gi\|... - gi\|22536589\|ref\|NP_687440.1\| UTP-glucose-1-phosphate uridylyltransferase [Streptococcus agalactiae 2... gi\|76788651, gi\|... - gi\|76788651\|ref\|YP_329125.1\| UTP-glucose-1-phosphate uridylyltransferase [Streptococcus agalactiae A... gi\|77414750, gi\|... - gi\|77414750\|ref\|ZP_00790877.1\| UTP-glucose-1-phosphate uridylyltransferase [Streptococcus agalactiae... gi\|77161613, gi\|... - gi\|77412324\|ref\|ZP_00788637.1\| UTP-glucose-1-phosphate uridylyltransferase [Streptococcus agalactiae... gi\|77409739, gi\|... - gi\|77409739\|ref\|ZP_00786398.1\| UTP-glucose-1-phosphate uridylyltransferase [Streptococcus agalactiae... gi\|77174373, gi\|... - gi\|77407013\|ref\|ZP_00784025.1\| UTP-glucose-1-phosphate uridylyltransferase [Streptococcus agalactiae...	261.0	[0..1]	[293..1]
gi\|62514210, gi\|... - gi\|62514210\|ref\|ZP_00385720.1\| COG1210: UDP-glucose pyrophosphorylase [Lactobacillus casei ATCC 334]...	259.0	[0..1]	[291..1]
gi\|78610757, gi\|... - gi\|81429114\|ref\|YP_396115.1\| UTP--glucose-1-phosphate uridylyltransferase [Lactobacillus sakei subsp...	258.0	[0..1]	[296..1]
gi\|56381697, gi\|... - gi\|56421855\|ref\|YP_149173.1\| UTP-glucose-1-phosphate uridylyltransferase [Geobacillus kaustophilus H...	258.0	[0..2]	[296..3]

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Predicted Domain #1

Region A:
Residues: [1-301]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKVRKAVIPA AGLGTRFLPA TKAMPKEMVP IVDKPTIQFI VEEAKKSGIE DILIVTGKNK  60
   61 RSIEDHFDAN PELEQDLEEK GKTELLHLTQ SITNLGVNLY YTRQPHPAGL GDAILRARSF 120
  121 VGDEPFAVML GDDLMEDKVP LTKQLIDRYD KTHASTIAVM PVPHEEVSKY GVIDPDSEIE 180
  181 PGLINVKAFV EKPDVDKAPS DYAIIGRYLL TPEIFDILAH QKPGRGGEIQ LTDAIDTMNK 240
  241 TQRVFAHVFN GERHDVGNKE GYLETSIEYG LSHPQIKDDL REYIINMAQK LQKEDKNSKK 300
  301 K

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	59.69897
Match:	2ux8A
Description:	No description for 2ux8A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits