YRC Public Data Repository - Protein Structure Prediction

Protein:	DGK2_LACJO
Organism:	Lactobacillus johnsonii NCC 533
Length:	224 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for DGK2_LACJO.

Description	E-value	Query Range	Subject Range
gi\|116630403, gi... - gi\|116630403\|ref\|YP_819556.1\| deoxynucleoside kinase [Lactobacillus gasseri ATCC 33323], gi\|11609598...	188.0	[0..1]	[224..2]
gi\|1361410, gi\|4... - gi\|403984\|gb\|AAB09751.1\| deoxyguanosine kinase/deoxyadenosine kinase(I) subunit, sp\|Q59484\|DGK2_LACA...	186.0	[0..1]	[224..1]
DGK2_LACAC - Deoxyguanosine kinase OS=Lactobacillus acidophilus GN=LBA1950 PE=3 SV=2 DGK2_LACAC - Deoxyguanosine kinase OS=Lactobacillus acidophilus (strain ATCC 700396 / NCK56 / N2 / NCFM) GN=LBA19... gi\|227902622, gi... - gi\|227902622\|ref\|ZP_04020427.1\| deoxyguanosine kinase [Lactobacillus acidophilus ATCC 4796], gi\|2278...	175.0	[0..1]	[221..1]
gi\|104774799, gi... - gi\|104774799\|ref\|YP_619779.1\| deoxyguanosine kinase [Lactobacillus delbrueckii subsp. bulgaricus ATC... gi\|62515287, gi\|... - gi\|62515287\|ref\|ZP_00386723.1\| COG1428: Deoxynucleoside kinases [Lactobacillus delbrueckii subsp. bu...	168.0	[0..1]	[218..1]
DGK1_LACJO - Deoxyadenosine kinase OS=Lactobacillus johnsonii GN=LJ_1824 PE=1 SV=3 gi\|403983, gi\|13... - gi\|403983\|gb\|AAB09750.1\| deoxyguanosine kinase/deoxyadenosine kinase(I) subunit, sp\|Q59483\|DGK1_LACA... DGK1_LACJO - Deoxyadenosine kinase OS=Lactobacillus johnsonii (strain CNCM I-12250 / La1 / NCC 533) GN=LJ_1824 PE...	165.0	[0..1]	[215..1]
gi\|77175746, gi\|... - gi\|77405673\|ref\|ZP_00782761.1\| deoxynucleoside kinase family protein [Streptococcus agalactiae H36B]... gi\|76787409, gi\|... - gi\|76787409\|ref\|YP_330443.1\| deoxynucleoside kinase family protein [Streptococcus agalactiae A909], ...	162.0	[0..2]	[211..1]

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Predicted Domain #1

Region A:
Residues: [1-224]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTVIVLSGPI GAGKSSLTGI LSKYLGTNPF YESVDDNPVL PLFYENPKKY AFLLQVYFLN  60
   61 TRFRSIKSAL TDDNNVLDRS IYEDALFFQM NADIGRATPE EVDTYYELLH NMMSELDRMP 120
  121 KKNPDLLVHI DVSYDTMLKR IQKRGRNYEQ LSYDPTLEDY YKRLLRYYKP WYEKYDYSPK 180
  181 MTIDGDKLDF MASEEDRQEV LNQIVAKLKE MGKFEDDWKP NLVK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	27.69897
Match:	2jasA
Description:	No description for 2jasA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits