YRC Public Data Repository - Protein Structure Prediction

Protein:	CCDS10395.1_1
Organism:	Chlorocebus aethiops
Length:	108 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CCDS10395.1_1.

Description	E-value	Query Range	Subject Range
gi\|73959879 - gi\|73959879\|ref\|XP_854405.1\| PREDICTED: similar to DNA-directed RNA polymerases III 12.5 kDa polypep...	146.0	[0..1]	[108..25]
gi\|148237221, gi... - gi\|38511445\|gb\|AAH61683.1\| MGC68582 protein [Xenopus laevis], gi\|148237221\|ref\|NP_001083658.1\| DNA-d...	139.0	[0..1]	[108..1]
gi\|12862220 - gi\|12862220\|dbj\|BAB32384.1\| unnamed protein product [Mus musculus]	139.0	[0..1]	[108..1]
gi\|21956651 - gi\|21956651\|gb\|AAM83406.1\| POLR3K [Sphoeroides nephelus]	138.0	[0..1]	[108..1]
gi\|50540172, gi\|... - gi\|50540172\|ref\|NP_001002553.1\| polymerase (RNA) III (DNA directed) polypeptide K [Danio rerio], gi\|...	138.0	[0..1]	[108..1]
POLR3K - polymerase (RNA) III (DNA directed) polypeptide K, 12.3 kDa gi\|157929168, gi... - gi\|157929168\|gb\|ABW03869.1\| polymerase (RNA) III (DNA directed) polypeptide K, 12.3 kDa [synthetic c... tr\|M3WAT9\|M3WAT9... - DNA-directed RNA polymerase subunit OS=Felis catus GN=POLR3K PE=3 SV=1	138.0	[0..1]	[108..1]
gi\|62751522, gi\|... - gi\|89266864\|emb\|CAJ83854.1\| polymerase (RNA) III (DNA directed) polypeptide K, 12.3 kDa [Xenopus tro...	137.0	[0..1]	[108..1]
gi\|47220062 - gi\|47220062\|emb\|CAG12210.1\| unnamed protein product [Tetraodon nigroviridis]	137.0	[0..1]	[108..1]
gi\|113195665, gi... - gi\|92081584\|dbj\|BAE93339.1\| RNA polymerase [Ciona intestinalis], gi\|198420477\|ref\|XP_002119150.1\| PR...	137.0	[0..1]	[108..1]

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Predicted Domain #1

Region A:
Residues: [1-108]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLLFCPGCGN GLIVEEGQRC HRFACNTCPY VHNITRKVTN RKYPKLKEVD DVLGGAAAWE  60
   61 NVDSTAEPCP KCEHPRAYFM QLQTRSADEP MTTFYKCCNA QCGHRWRD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	20.522879
Match:	1i3qI
Description:	RBP9 subunit of RNA polymerase II
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits