YRC Public Data Repository - Protein Structure Prediction

Protein:	CCDS10760.1_1
Organism:	Chlorocebus aethiops
Length:	227 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CCDS10760.1_1.

Description	E-value	Query Range	Subject Range
gi\|61371857 - gi\|61371857\|gb\|AAX43744.1\| cleavage and polyadenylation specific factor 5 [synthetic construct]	0.0	[1..227]	[1..227]
gi\|194208617 - gi\|194208617\|ref\|XP_001915145.1\| PREDICTED: similar to nudix (nucleoside diphosphate linked moiety X... CPSF5_MOUSE - Cleavage and polyadenylation specificity factor subunit 5 OS=Mus musculus GN=Nudt21 PE=1 SV=1 CPSF5_RAT - Cleavage and polyadenylation specificity factor subunit 5 OS=Rattus norvegicus GN=Nudt21 PE=2 SV=1 gi\|53733680 - gb\|AAH84013.1\| Unknown (protein for MGC:98181) [Xenopus laevis] gi\|73950369 - gi\|73950369\|ref\|XP_535298.2\| PREDICTED: similar to nudix (nucleoside diphosphate linked moiety X)-ty... gi\|126296153 - gi\|126296153\|ref\|XP_001364759.1\| PREDICTED: hypothetical protein [Monodelphis domestica] tr\|G1TD91\|G1TD91... - pep:novel chromosome:oryCun2:5:12760904:12781768:-1 gene:ENSOCUG00000017224 transcript:ENSOCUT000000... tr\|M3WA00\|M3WA00... - Nudix hydrolase 21 OS=Felis catus GN=NUDT21 PE=4 SV=1	0.0	[1..227]	[1..227]
gi\|165971084, gi... - gi\|89267892\|emb\|CAJ83328.1\| cleavage and polyadenylation specific factor 5 [Xenopus tropicalis], gi\|...	0.0	[1..227]	[1..227]
gi\|48145955 - gi\|48145955\|emb\|CAG33200.1\| CPSF5 [Homo sapiens]	0.0	[1..227]	[1..227]
CPSF5_XENLA - Cleavage and polyadenylation specificity factor subunit 5 OS=Xenopus laevis GN=cpsf5 PE=2 SV=1	0.0	[1..227]	[1..227]
CPSF5_DANRE - Cleavage and polyadenylation specificity factor subunit 5 OS=Danio rerio GN=cpsf5 PE=2 SV=1	0.0	[1..227]	[1..228]
gi\|47230369 - gi\|47230369\|emb\|CAF99562.1\| unnamed protein product [Tetraodon nigroviridis]	0.0	[1..227]	[1..229]

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Predicted Domain #1

Region A:
Residues: [1-227]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVVPPNRSQ TGWPRGVTQF GNKYIQQTKP LTLERTINLY PLTNYTFGTK EPLYEKDSSV  60
   61 AARFQRMREE FDKIGMRRTV EGVLIVHEHR LPHVLLLQLG TTFFKLPGGE LNPGEDEVEG 120
  121 LKRLMTEILG RQDGVLQDWV IDDCIGNWWR PNFEPPQYPY IPAHITKPKE HKKLFLVQLQ 180
  181 EKALFAVPKN YKLVAAPLFE LYDNAPGYGP IISSLPQLLS RFNFIYN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	109.0
Match:	2cl3A
Description:	No description for 2cl3A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits