YRC Public Data Repository - Protein Structure Prediction

Protein:	RNPA_LISIN
Organism:	Listeria innocua Clip11262
Length:	119 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RNPA_LISIN.

Description	E-value	Query Range	Subject Range
RNPA_GEOKA - Ribonuclease P protein component OS=Geobacillus kaustophilus (strain HTA426) GN=rnpA PE=3 SV=1 gi\|229331359, gi... - gi\|229497933\|ref\|ZP_04391632.1\| ribonuclease P protein component [Geobacillus sp. Y412MC52], gi\|2293... RNPA_GEOKA - Ribonuclease P protein component OS=Geobacillus kaustophilus GN=rnpA PE=3 SV=1	123.0	[0..1]	[118..1]
gi\|47018418, gi\|... - gi\|47093224\|ref\|ZP_00230997.1\| ribonuclease P protein component [Listeria monocytogenes str. 4b H785... RNPA_LISMC - Ribonuclease P protein component OS=Listeria monocytogenes serotype 4b (strain Clip81459) GN=rnpA PE... RNPA_LISMF - Ribonuclease P protein component OS=Listeria monocytogenes serotype 4b (strain F2365) GN=rnpA PE=3 S... gi\|254824782 - gi\|254824782\|ref\|ZP_05229783.1\| ribonuclease P [Listeria monocytogenes FSL J1-194] RNPA_LISMO - Ribonuclease P protein component OS=Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e... gi\|254877578 - gi\|254877578\|ref\|ZP_05250288.1\| ribonuclease P [Listeria monocytogenes FSL J2-071] gi\|47014395, gi\|... - gi\|47097240\|ref\|ZP_00234802.1\| ribonuclease P protein component [Listeria monocytogenes str. 1/2a F6... gi\|254930871 - gi\|254930871\|ref\|ZP_05264230.1\| ribonuclease P [Listeria monocytogenes HPB2262] gi\|255520072 - gi\|255520072\|ref\|ZP_05387309.1\| ribonuclease P [Listeria monocytogenes FSL J1-175] gi\|224503079 - gi\|224503079\|ref\|ZP_03671386.1\| ribonuclease P [Listeria monocytogenes FSL R2-561] gi\|254899688, gi... - gi\|254899688\|ref\|ZP_05259612.1\| ribonuclease P [Listeria monocytogenes J0161], gi\|153184350\|ref\|ZP_0... gi\|127763677, gi... - gi\|254913109\|ref\|ZP_05263121.1\| ribonuclease P [Listeria monocytogenes J2818], gi\|153192640\|ref\|ZP_0... gi\|133725977, gi... - gi\|153169029\|ref\|ZP_01928768.1\| ribonuclease P protein component [Listeria monocytogenes FSL N1-017]... RNPA_LISMC - Ribonuclease P protein component OS=Listeria monocytogenes serotype 4b (strain CLIP80459) GN=rnpA PE... gi\|153176160, gi... - gi\|254827422\|ref\|ZP_05232109.1\| ribonuclease P [Listeria monocytogenes FSL N3-165], gi\|153176160\|ref... gi\|133731547, gi... - gi\|153181029\|ref\|ZP_01933996.1\| ribonuclease P protein component [Listeria monocytogenes F6900], gi\|... RNPA_LISMO - Ribonuclease P protein component OS=Listeria monocytogenes GN=rnpA PE=3 SV=1	121.0	[0..1]	[119..1]
RNPA_BACCN - Ribonuclease P protein component OS=Bacillus cytotoxicus (strain DSM 22905 / CIP 110041 / 391-98 / N...	119.0	[0..1]	[110..1]
gi\|228936767, gi... - gi\|228936767\|ref\|ZP_04099558.1\| Ribonuclease P protein component [Bacillus thuringiensis serovar and... gi\|228829212, gi... - gi\|228930493\|ref\|ZP_04093493.1\| Ribonuclease P protein component [Bacillus thuringiensis serovar pon... gi\|229094598, gi... - gi\|229094598\|ref\|ZP_04225665.1\| Ribonuclease P protein component [Bacillus cereus Rock3-42], gi\|2286... gi\|228949209, gi... - gi\|228949209\|ref\|ZP_04111477.1\| Ribonuclease P protein component [Bacillus thuringiensis serovar mon... gi\|229187716, gi... - gi\|229187716\|ref\|ZP_04314852.1\| Ribonuclease P protein component [Bacillus cereus BGSC 6E1], gi\|2285... gi\|229124990, gi... - gi\|229124990\|ref\|ZP_04254164.1\| Ribonuclease P protein component [Bacillus cereus 95/8201], gi\|22865... gi\|118480514, gi... - gi\|118480514\|ref\|YP_897665.1\| ribonuclease P [Bacillus thuringiensis str. Al Hakam], gi\|118419739\|gb... gi\|65317468 - gi\|65317468\|ref\|ZP_00390427.1\| COG0594: RNase P protein component [Bacillus anthracis str. A2012] gi\|228918099, gi... - gi\|228918099\|ref\|ZP_04081627.1\| Ribonuclease P protein component [Bacillus thuringiensis serovar pul...	119.0	[0..1]	[119..5]
RNPA_LACS1 - Ribonuclease P protein component OS=Lactobacillus salivarius (strain UCC118) GN=rnpA PE=3 SV=1 gi\|227891667, gi... - gi\|227891667\|ref\|ZP_04009472.1\| ribonuclease P [Lactobacillus salivarius ATCC 11741], gi\|227866470\|g...	119.0	[0..1]	[111..1]
RNPA_BACHD - Ribonuclease P protein component OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344... RNPA_BACHD - Ribonuclease P protein component OS=Bacillus halodurans GN=rnpA PE=3 SV=1	118.0	[0..1]	[114..1]
RNPA_OCEIH - Ribonuclease P protein component OS=Oceanobacillus iheyensis (strain DSM 14371 / JCM 11309 / KCTC 39... RNPA_OCEIH - Ribonuclease P protein component OS=Oceanobacillus iheyensis GN=rnpA PE=3 SV=1	118.0	[0..1]	[118..1]
RNPA_BACAN - Ribonuclease P protein component OS=Bacillus anthracis GN=rnpA PE=3 SV=1 RNPA_BACAC - Ribonuclease P protein component OS=Bacillus anthracis (strain CDC 684 / NRRL 3495) GN=rnpA PE=3 SV=... gi\|254687072 - gi\|254687072\|ref\|ZP_05150930.1\| ribonuclease P [Bacillus anthracis str. CNEVA-9066] RNPA_BACAA - Ribonuclease P protein component OS=Bacillus anthracis (strain A0248) GN=rnpA PE=3 SV=1 gi\|254735162 - gi\|254735162\|ref\|ZP_05192872.1\| ribonuclease P [Bacillus anthracis str. Western North America USA615... gi\|254724145 - gi\|254724145\|ref\|ZP_05185930.1\| ribonuclease P [Bacillus anthracis str. A1055] gi\|254755961 - gi\|254755961\|ref\|ZP_05207993.1\| ribonuclease P [Bacillus anthracis str. Vollum] gi\|254742129 - gi\|254742129\|ref\|ZP_05199816.1\| ribonuclease P [Bacillus anthracis str. Kruger B] gi\|254761359 - gi\|254761359\|ref\|ZP_05213381.1\| ribonuclease P [Bacillus anthracis str. Australia 94] RNPA_BACC0 - Ribonuclease P protein component OS=Bacillus cereus (strain AH820) GN=rnpA PE=3 SV=1 gi\|196045476, gi... - gi\|196045476\|ref\|ZP_03112707.1\| ribonuclease P protein component [Bacillus cereus 03BB108], gi\|19602... gi\|196041981, gi... - gi\|196041981\|ref\|ZP_03109268.1\| ribonuclease P protein component [Bacillus cereus NVH0597-99], gi\|19... RNPA_BACHK - Ribonuclease P protein component OS=Bacillus thuringiensis subsp. konkukian GN=rnpA PE=3 SV=1 gi\|170689468, gi... - gi\|170689468\|ref\|ZP_02880658.1\| ribonuclease P protein component [Bacillus anthracis str. A0465], gi... gi\|167641750, gi... - gi\|167641750\|ref\|ZP_02399993.1\| ribonuclease P protein component [Bacillus anthracis str. A0193], gi... gi\|167635105, gi... - gi\|167635105\|ref\|ZP_02393422.1\| ribonuclease P protein component [Bacillus anthracis str. A0442], gi... gi\|165873026, gi... - gi\|165873026\|ref\|ZP_02217647.1\| ribonuclease P protein component [Bacillus anthracis str. A0488], gi... gi\|196036129, gi... - gi\|196036129\|ref\|ZP_03103529.1\| ribonuclease P protein component [Bacillus cereus W], gi\|195991296\|g... gi\|190569286, gi... - gi\|190569286\|ref\|ZP_03022180.1\| ribonuclease P protein component [Bacillus anthracis Tsiankovskii-I]... gi\|177655269, gi... - gi\|177655269\|ref\|ZP_02936823.1\| ribonuclease P protein component [Bacillus anthracis str. A0174], gi... gi\|170707583, gi... - gi\|170707583\|ref\|ZP_02898036.1\| ribonuclease P protein component [Bacillus anthracis str. A0389], gi... RNPA_BACHK - Ribonuclease P protein component OS=Bacillus thuringiensis subsp. konkukian (strain 97-27) GN=rnpA P... RNPA_BACCZ - Ribonuclease P protein component OS=Bacillus cereus (strain ZK / E33L) GN=rnpA PE=3 SV=1 gi\|47531074, gi\|... - gi\|47531074\|ref\|YP_022423.1\| ribonuclease P [Bacillus anthracis str. 'Ames Ancestor'], gi\|47506222\|g... gi\|49182251, gi\|... - gi\|49188324\|ref\|YP_031577.1\| ribonuclease P [Bacillus anthracis str. Sterne], gi\|49182251\|gb\|AAT5762... gi\|21397969 - ref\|NP_653954.1\| Ribonuclease_P, Ribonuclease P [Bacillus anthracis str. A2012] gi\|30265505, gi\|... - gi\|30265505\|ref\|NP_847882.1\| ribonuclease P [Bacillus anthracis str. Ames], gi\|30260183\|gb\|AAP29368....	117.0	[0..1]	[119..1]
RNPA_BACSK - Ribonuclease P protein component OS=Bacillus clausii (strain KSM-K16) GN=rnpA PE=3 SV=1	117.0	[0..1]	[119..1]
gi\|228911327, gi... - gi\|228911327\|ref\|ZP_04075131.1\| Ribonuclease P protein component [Bacillus thuringiensis IBL 200], g... gi\|228905431, gi... - gi\|228905431\|ref\|ZP_04069386.1\| Ribonuclease P protein component [Bacillus thuringiensis IBL 4222], ... gi\|228803965, gi... - gi\|228955737\|ref\|ZP_04117732.1\| Ribonuclease P protein component [Bacillus thuringiensis serovar kur... gi\|228817062, gi... - gi\|228942636\|ref\|ZP_04105168.1\| Ribonuclease P protein component [Bacillus thuringiensis serovar ber... gi\|228784176, gi... - gi\|228975566\|ref\|ZP_04136118.1\| Ribonuclease P protein component [Bacillus thuringiensis serovar thu... gi\|75765125, gi\|... - gi\|75765125\|ref\|ZP_00744402.1\| Ribonuclease P protein component [Bacillus thuringiensis serovar isra... gi\|228791068, gi... - gi\|228968639\|ref\|ZP_04129622.1\| Ribonuclease P protein component [Bacillus thuringiensis serovar sot... gi\|229072952, gi... - gi\|229072952\|ref\|ZP_04206148.1\| Ribonuclease P protein component [Bacillus cereus F65185], gi\|228710... gi\|228982202, gi... - gi\|228982202\|ref\|ZP_04142491.1\| Ribonuclease P protein component [Bacillus thuringiensis Bt407], gi\|...	116.0	[0..1]	[114..5]

Back

Predicted Domain #1

Region A:
Residues: [1-119]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKKYRIKKN DDFQKVFRRG KSFANRQFVV YTLKQEEASH FRIGLSVSKK IGNAVCRNRI  60
   61 KRYIRQSFHE LESQINPENE YIIIARKPAA NMDFHEVKKS LIHVLKVGRV LKQKPNNSK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	22.30103
Match:	1a6fA
Description:	RNASE P PROTEIN FROM BACILLUS SUBTILIS
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
tRNA-specific ribonuclease activity	6.1454778021122	bayes_pls_golite062009
ribonuclease P activity	5.34408239201797	bayes_pls_golite062009
structural constituent of ribosome	3.49304472389303	bayes_pls_golite062009
RNA binding	2.94550290381601	bayes_pls_golite062009
structural molecule activity	2.91017901273919	bayes_pls_golite062009
3'-5'-exoribonuclease activity	2.16830676862423	bayes_pls_golite062009
exoribonuclease activity, producing 5'-phosphomonoesters	1.94887328847363	bayes_pls_golite062009
exoribonuclease activity	1.90081280972069	bayes_pls_golite062009
mRNA binding	1.42024615739664	bayes_pls_golite062009
ribonuclease activity	1.31550811238109	bayes_pls_golite062009
transcription regulator activity	1.20748032530392	bayes_pls_golite062009
nucleic acid binding	1.05662964529454	bayes_pls_golite062009
binding	0.907487229190259	bayes_pls_golite062009
catalytic activity	0.878454819018611	bayes_pls_golite062009
DNA binding	0.828609700556836	bayes_pls_golite062009
nuclease activity	0.69721312877891	bayes_pls_golite062009
3'-5' exonuclease activity	0.477960254167	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: