YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|25286220, gi\|...
Organism:	Agrobacterium tumefaciens
Length:	300 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|25286220, gi|....

Description	E-value	Query Range	Subject Range
gi\|83360838, gi\|... - gi\|83369484\|ref\|ZP_00914338.1\| Formyltetrahydrofolate deformylase [Rhodobacter sphaeroides ATCC 1702...	324.0	[0..7]	[300..1]
gi\|119375107, gi... - gi\|69936296\|ref\|ZP_00631122.1\| Formyltetrahydrofolate deformylase [Paracoccus denitrificans PD1222],...	323.0	[0..7]	[300..1]
gi\|25286221, gi\|... - pir\|\|AF2879 formyltetrahydrofolate deformylase [imported] - Agrobacterium tumefaciens (strain C58, D... gi\|17740955, gi\|... - gi\|17936346\|ref\|NP_533136.1\| formyltetrahydrofolate deformylase [Agrobacterium tumefaciens str. C58]...	323.0	[0..7]	[300..1]
gi\|114767063, gi... - gi\|114767063\|ref\|ZP_01445960.1\| formyltetrahydrofolate deformylase protein [Roseovarius sp. HTCC2601...	319.0	[0..7]	[300..1]
gi\|77464523, gi\|... - gi\|77464523\|ref\|YP_354027.1\| formyltetrahydrofolate deformylase [Rhodobacter sphaeroides 2.4.1], gi\|... gi\|221161214, gi... - gi\|221640433\|ref\|YP_002526695.1\| Formyltetrahydrofolate deformylase [Rhodobacter sphaeroides KD131],...	319.0	[0..7]	[300..1]
gi\|126463363, gi... - gi\|83372593\|ref\|ZP_00917373.1\| Formyltetrahydrofolate deformylase [Rhodobacter sphaeroides ATCC 1702...	319.0	[0..7]	[300..1]
gi\|15075961 - gi\|15075961\|emb\|CAC47515.1\| Putative formyltetrahydrofolate deformylase [Sinorhizobium meliloti 1021... gi\|15966689 - gi\|15966689\|ref\|NP_387042.1\| formyltetrahydrofolate deformylase [Sinorhizobium meliloti 1021]	318.0	[0..7]	[300..1]
gi\|113722215, gi... - gi\|150378015\|ref\|YP_001314610.1\| formyltetrahydrofolate deformylase [Sinorhizobium medicae WSM419], ...	316.0	[0..9]	[300..2]
gi\|86279986, gi\|... - gi\|86355884\|ref\|YP_467776.1\| formyltetrahydrofolate deformylase [Rhizobium etli CFN 42], gi\|86279986...	316.0	[0..7]	[300..1]

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Predicted Domain #1

Region A:
Residues: [1-90]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTERRQMTNF VLTVTCKSTR GIVAALSGLL AEKGCNIVDS SQFDDLGTGR FFMRVGFISE  60
   61 EGATREALMA GLAPISKTFG MEVALHDQAE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	15.221849
Match:	1zpvA
Description:	ACT domain protein from Streptococcus pneumoniae
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
transferase activity, transferring aldehyde or ketonic groups	1.82494854621265	bayes_pls_golite062009
catalytic activity	1.01569611874813	bayes_pls_golite062009
transferase activity	0.07375530569672	bayes_pls_golite062009

Predicted Domain #2

Region A:
Residues: [91-300]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RMKVLLMVSR FGHCLNDLLY RWRIGALPID IVGVVSNHFD YQKVVVNHDI PFHHIPVTKE  60
   61 NKPQAEARIM EIAESTGTEL VVLARYMQVL SDRMCEAMSG KIINIHHSFL PSFKGANPYK 120
  121 QAYQRGVKLI GATAHYVTAD LDEGPIIEQD IVRITHAQSA EDYVSLGRDV EAQVLARAIH 180
  181 AHIHRRVFLN GSRTVVFPPS PGSYASERMG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	49.045757
Match:	1c3eA
Description:	Glycinamide ribonucleotide transformylase, GART
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
hydroxymethyl-, formyl- and related transferase activity	4.30911230869939	bayes_pls_golite062009
glycine hydroxymethyltransferase activity	3.93829204810029	bayes_pls_golite062009
phosphoribosylglycinamide formyltransferase activity	3.16061609458624	bayes_pls_golite062009
catalytic activity	2.53047786804923	bayes_pls_golite062009
methyltransferase activity	1.49959796419617	bayes_pls_golite062009
transferase activity, transferring one-carbon groups	1.49630496597474	bayes_pls_golite062009
transferase activity	1.21569993951472	bayes_pls_golite062009
formyltetrahydrofolate deformylase activity	0.85803295611657	bayes_pls_golite062009
methionyl-tRNA formyltransferase activity	0.27296524587077	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions:

Predicted functions: