YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|17987642, gi\|...
Organism:	Brucella melitensis bv. 1 str. 16M
Length:	155 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|17987642, gi|....

Description	E-value	Query Range	Subject Range
gi\|163673576, gi... - gi\|163842853\|ref\|YP_001627257.1\| hypothetical protein BSUIS_A0604 [Brucella suis ATCC 23445], gi\|163... gi\|23347366, gi\|... - gi\|23501463\|ref\|NP_697590.1\| hypothetical protein BR0574 [Brucella suis 1330], gi\|23347366\|gb\|AAN295... gi\|161618550, gi... - gi\|161618550\|ref\|YP_001592437.1\| hypothetical protein BCAN_A0589 [Brucella canis ATCC 23365], gi\|161... gi\|254729892 - gi\|254729892\|ref\|ZP_05188470.1\| hypothetical protein Babob42_01494 [Brucella abortus bv. 4 str. 292] gi\|189019371, gi... - gi\|189023799\|ref\|YP_001934567.1\| hypothetical protein BAbS19_I05600 [Brucella abortus S19], gi\|18901... gi\|62289542, gi\|... - gi\|62289542\|ref\|YP_221335.1\| hypothetical protein BruAb1_0596 [Brucella abortus bv. 1 str. 9-941], g... gi\|82615572 - gi\|82615572\|emb\|CAJ10555.1\| Protein of unknown function UPF0050 [Brucella melitensis biovar Abortus ... gi\|148559252, gi... - gi\|148559252\|ref\|YP_001258572.1\| hypothetical protein BOV_0575 [Brucella ovis ATCC 25840], gi\|148370... gi\|82699471 - gi\|82699471\|ref\|YP_414045.1\| hypothetical protein BAB1_0599 [Brucella melitensis biovar Abortus 2308... gi\|225852104, gi... - gi\|225852104\|ref\|YP_002732337.1\| hypothetical protein BMEA_A0614 [Brucella melitensis ATCC 23457], g... gi\|254696990 - gi\|254696990\|ref\|ZP_05158818.1\| hypothetical protein Babob28_04550 [Brucella abortus bv. 2 str. 86/8... gi\|254688860 - gi\|254688860\|ref\|ZP_05152114.1\| hypothetical protein Babob68_01481 [Brucella abortus bv. 6 str. 870] gi\|254703915 - gi\|254703915\|ref\|ZP_05165743.1\| hypothetical protein Bsuib36_08309 [Brucella suis bv. 3 str. 686] gi\|254701370 - gi\|254701370\|ref\|ZP_05163198.1\| hypothetical protein Bsuib55_10984 [Brucella suis bv. 5 str. 513] gi\|254709708 - gi\|254709708\|ref\|ZP_05171519.1\| hypothetical protein BpinB_05441 [Brucella pinnipedialis B2/94] gi\|254707709 - gi\|254707709\|ref\|ZP_05169537.1\| hypothetical protein BpinM_12266 [Brucella pinnipedialis M163/99/10]	211.0	[0..15]	[155..1]
gi\|14027113, gi\|... - gi\|14027113\|dbj\|BAB54067.1\| mll7646 [Mesorhizobium loti MAFF303099], gi\|13476352\|ref\|NP_107922.1\| hy...	207.0	[0..15]	[155..1]
gi\|146409362, gi... - gi\|78696245\|ref\|ZP_00860755.1\| protein of unknown function UPF0050 [Bradyrhizobium sp. BTAi1], gi\|78...	199.0	[0..10]	[144..6]
gi\|27378180, gi\|... - gi\|27378180\|ref\|NP_769709.1\| hypothetical protein bll3069 [Bradyrhizobium japonicum USDA 110], gi\|27...	197.0	[0..16]	[153..1]
gi\|25307099, gi\|... - pir\|\|AG2689 conserved hypothetical protein Atu0919 [imported] - Agrobacterium tumefaciens (strain C5... gi\|15888257, gi\|... - gi\|17934827\|ref\|NP_531617.1\| hypothetical protein Atu0919 [Agrobacterium tumefaciens str. C58], gi\|1...	197.0	[0..16]	[150..1]
gi\|110633232, gi... - gi\|69279616\|ref\|ZP_00614422.1\| Fe-S metabolism associated SufE [Mesorhizobium sp. BNC1], gi\|68189872...	196.0	[0..15]	[151..4]
gi\|90021067, gi\|... - gi\|90021067\|ref\|YP_526894.1\| cysteine desulfuration protein SufE [Saccharophagus degradans 2-40], gi...	195.0	[0..9]	[148..5]
gi\|77740519, gi\|... - gi\|77740519\|ref\|ZP_00809006.1\| Fe-S metabolism associated SufE [Rhodopseudomonas palustris BisA53], ...	195.0	[0..15]	[155..1]
gi\|27361302, gi\|... - gi\|27365156\|ref\|NP_760684.1\| hypothetical protein VV1_1803 [Vibrio vulnificus CMCP6], gi\|27361302\|gb...	194.0	[0..5]	[148..9]

Back

Predicted Domain #1

Region A:
Residues: [1-155]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRQKFCNDLF QASIMTTTID SIMSDFEFLD DWEDRYRYVI DLGKELPPYP DDARDAAHKV  60
   61 QGCVSQVWLK TLPQDGNDPV IEFLGDSDAH IVRGLVAIVL ALYSGRRASE ILATEPEEVL 120
  121 KKLGLDEHLT PQRSNGLRAM VARIHREAEL AKEST

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	38.522879
Match:	1ni7A
Description:	Hypothetical protein YgdK
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.256292883613773	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: