YRC Public Data Repository - Protein Structure Prediction

Protein:	CITD_STRP8
Organism:	Streptococcus pyogenes MGAS8232
Length:	102 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CITD_STRP8.

Description	E-value	Query Range	Subject Range
CITD_STRPD - Citrate lyase acyl carrier protein OS=Streptococcus pyogenes serotype M2 (strain MGAS10270) GN=citD ... CITD_STRPG - Citrate lyase acyl carrier protein OS=Streptococcus pyogenes serotype M5 (strain Manfredo) GN=citD P... gi\|71910718, gi\|... - gi\|71910718\|ref\|YP_282268.1\| citrate lyase subunit gamma [Streptococcus pyogenes MGAS5005], gi\|71853... CITD_STRP6 - Citrate lyase acyl carrier protein OS=Streptococcus pyogenes serotype M6 GN=citD PE=3 SV=1 CITD_STRPZ - Citrate lyase acyl carrier protein OS=Streptococcus pyogenes serotype M49 (strain NZ131) GN=citD PE=... CITD_STRP6 - Citrate lyase acyl carrier protein OS=Streptococcus pyogenes serotype M6 (strain ATCC BAA-946 / MGAS... CITD_STRP1 - Citrate lyase acyl carrier protein OS=Streptococcus pyogenes serotype M1 GN=citD PE=3 SV=1 gi\|15675156, gi\|... - gi\|15675156\|ref\|NP_269330.1\| citrate lyase subunit gamma [Streptococcus pyogenes M1 GAS], gi\|1362231...	159.0	[0..1]	[102..1]
CITD_STRPM - Citrate lyase acyl carrier protein OS=Streptococcus pyogenes serotype M28 (strain MGAS6180) GN=citD ... CITD_STRPF - Citrate lyase acyl carrier protein OS=Streptococcus pyogenes serotype M4 (strain MGAS10750) GN=citD ... CITD_STRPM - Citrate lyase acyl carrier protein OS=Streptococcus pyogenes serotype M28 GN=citD PE=3 SV=1	159.0	[0..1]	[102..1]
CITD_STRMU - Citrate lyase acyl carrier protein OS=Streptococcus mutans serotype c (strain ATCC 700610 / UA159) G... gi\|254997429 - gi\|254997429\|dbj\|BAH88030.1\| putative citrate lyase gamma-subunit [Streptococcus mutans NN2025] CITD_STRMU - Citrate lyase acyl carrier protein OS=Streptococcus mutans GN=citD PE=3 SV=1	157.0	[0..1]	[101..1]
CITD_STRPQ - Citrate lyase acyl carrier protein OS=Streptococcus pyogenes serotype M3 (strain SSI-1) GN=citD PE=3... CITD_STRP3 - Citrate lyase acyl carrier protein OS=Streptococcus pyogenes serotype M3 (strain ATCC BAA-595 / MGAS... CITD_STRP3 - Citrate lyase acyl carrier protein OS=Streptococcus pyogenes serotype M3 GN=citD PE=3 SV=1	157.0	[0..1]	[102..1]
CITD_LACC3 - Citrate lyase acyl carrier protein OS=Lactobacillus casei (strain ATCC 334) GN=citD PE=3 SV=1 gi\|227188126, gi... - gi\|227534236\|ref\|ZP_03964285.1\| citrate lyase acyl carrier protein gamma subunit [Lactobacillus para... CITD_LACCB - Citrate lyase acyl carrier protein OS=Lactobacillus casei (strain BL23) GN=citD PE=3 SV=1 gi\|224455096, gi... - gi\|239629779\|ref\|ZP_04672810.1\| citrate lyase subunit gamma [Lactobacillus paracasei subsp. paracase...	153.0	[0..1]	[100..1]
CITD_ENTFA - Citrate lyase acyl carrier protein OS=Enterococcus faecalis GN=citD PE=3 SV=1 CITD_ENTFA - Citrate lyase acyl carrier protein OS=Enterococcus faecalis (strain ATCC 700802 / V583) GN=citD PE=3...	151.0	[0..1]	[102..1]
gi\|238856425, gi... - gi\|238856425\|ref\|ZP_04646694.1\| citrate lyase acyl carrier protein [Enterococcus faecalis TUSoD Ef11... gi\|62736054 - gi\|62736054\|gb\|AAX97434.1\| citrate lyase gamma subunit [Enterococcus faecalis]	150.0	[0..1]	[102..1]
gi\|121550082, gi... - gi\|121585719\|ref\|ZP_01675514.1\| citrate lyase, gamma subunit [Vibrio cholerae 2740-80], gi\|121550082... CITD_VIBCH - Citrate lyase acyl carrier protein OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba ... gi\|153220742, gi... - gi\|153220742\|ref\|ZP_01951853.1\| citrate lyase, gamma subunit [Vibrio cholerae MAK 757], gi\|124120306... CITD_VIBCH - Citrate lyase acyl carrier protein OS=Vibrio cholerae GN=citD PE=3 SV=1 gi\|153817266, gi... - gi\|153817266\|ref\|ZP_01969933.1\| citrate lyase, gamma subunit [Vibrio cholerae NCTC 8457], gi\|1265121... gi\|229350705, gi... - gi\|229510740\|ref\|ZP_04400219.1\| citrate lyase beta chain [Vibrio cholerae B33], gi\|229350705\|gb\|EEO1... gi\|254285511, gi... - gi\|254285511\|ref\|ZP_04960475.1\| citrate lyase, gamma subunit [Vibrio cholerae AM-19226], gi\|19775294... CITD_VIBCM - Citrate lyase acyl carrier protein OS=Vibrio cholerae serotype O1 (strain M66-2) GN=citD PE=3 SV=1 gi\|229357811, gi... - gi\|229505588\|ref\|ZP_04395098.1\| citrate lyase beta chain [Vibrio cholerae BX 330286], gi\|229357811\|g... gi\|229349958, gi... - gi\|229513065\|ref\|ZP_04402531.1\| citrate lyase beta chain [Vibrio cholerae TMA 21], gi\|229349958\|gb\|E... gi\|229344576, gi... - gi\|229517861\|ref\|ZP_04407305.1\| citrate lyase beta chain [Vibrio cholerae RC9], gi\|229344576\|gb\|EEO0... gi\|229608606, gi... - gi\|229608606\|ref\|YP_002879254.1\| citrate lyase beta chain [Vibrio cholerae MJ-1236], gi\|229371261\|gb... gi\|75831963, gi\|... - gi\|75831963\|ref\|ZP_00761222.1\| COG3052: Citrate lyase, gamma subunit [Vibrio cholerae MO10], gi\|2548... gi\|125622442, gi... - gi\|75820948\|ref\|ZP_00750985.1\| COG3052: Citrate lyase, gamma subunit [Vibrio cholerae V51], gi\|25422...	149.0	[0..1]	[97..1]
gi\|254222155, gi... - gi\|75823902\|ref\|ZP_00753377.1\| COG3052: Citrate lyase, gamma subunit [Vibrio cholerae RC385], gi\|254... gi\|124123889, gi... - gi\|153800600\|ref\|ZP_01955186.1\| citrate lyase, gamma subunit [Vibrio cholerae MZO-3], gi\|124123889\|g... gi\|229339748, gi... - gi\|229523385\|ref\|ZP_04412792.1\| citrate lyase beta chain [Vibrio cholerae TM 11079-80], gi\|229339748... tr\|A2PP62\|A2PP62... - Citrate lyase acyl carrier protein OS=Vibrio cholerae GN=citD PE=3 SV=1, Citrate lyase acyl carrier ... gi\|148876205, gi... - gi\|153828251\|ref\|ZP_01980918.1\| citrate lyase, gamma subunit [Vibrio cholerae 623-39], gi\|148876205\|... gi\|149741804, gi... - gi\|153824586\|ref\|ZP_01977253.1\| citrate lyase, gamma subunit [Vibrio cholerae MZO-2], gi\|149741804\|g...	149.0	[0..1]	[97..1]
CITD_VIBC3 - Citrate lyase acyl carrier protein OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Classical Oga... gi\|121725979, gi... - gi\|75816826\|ref\|ZP_00747285.1\| COG3052: Citrate lyase, gamma subunit [Vibrio cholerae V52], gi\|12172...	147.0	[0..1]	[97..1]

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Predicted Domain #1

Region A:
Residues: [1-102]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDIKQTAVAG SLESSDLMIT VSPNDEQTIT ITLDSSVEKQ FGNHIRQLIH QTLVNLKVTA  60
   61 AKVEAVDKGA LDCTIQARTI AAVHRAAGVD QYDWKEIDSW NV

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	69.017729
Match:	PF04953.4
Description:	No description for PF04953.4 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.904	N/A	N/A	d.108.1	Acyl-CoA N-acyltransferases (Nat)

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits