YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|20806995
Organism:	Caldanaerobacter subterraneus subsp. tengcongensis
Length:	228 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|20806995.

Description	E-value	Query Range	Subject Range
gi\|241884153, gi... - gi\|241903512\|ref\|ZP_04788235.1\| phosphoribosyltransferase [Thermoanaerobacter brockii subsp. finnii ... gi\|242230860, gi... - gi\|242257633\|ref\|ZP_04802491.1\| phosphoribosyltransferase [Thermoanaerobacter sp. X513], gi\|24223086... gi\|76797031, gi\|... - gi\|76797031\|ref\|ZP_00779375.1\| Phosphoribosyltransferase [Thermoanaerobacter ethanolicus ATCC 33223]... gi\|167039108, gi... - gi\|167039108\|ref\|YP_001662093.1\| phosphoribosyltransferase [Thermoanaerobacter sp. X514], gi\|1668533...	181.0	[0..1]	[224..1]
gi\|71906257, gi\|... - gi\|71906257\|ref\|YP_283844.1\| phosphoribosyltransferase [Dechloromonas aromatica RCB], gi\|71845878\|gb...	157.0	[0..9]	[226..30]
gi\|71545357, gi\|... - gi\|71545357\|ref\|ZP_00666294.1\| Phosphoribosyltransferase [Syntrophobacter fumaroxidans MPOB], gi\|714...	152.0	[0..11]	[226..19]
gi\|58697413, gi\|... - gi\|58697413\|ref\|ZP_00372723.1\| competence protein F, interruption-N [Wolbachia endosymbiont of Droso... gi\|225630605, gi... - gi\|225630605\|ref\|YP_002727396.1\| putative competence protein F [Wolbachia sp. wRi], gi\|225592586\|gb\|...	149.0	[0..5]	[226..11]
gi\|85713804, gi\|... - gi\|85713804\|ref\|ZP_01044794.1\| phosphoribosyltransferase [Nitrobacter sp. Nb-311A], gi\|85699708\|gb\|E...	149.0	[0..4]	[225..34]
gi\|148715446, gi... - gi\|148825286\|ref\|YP_001290039.1\| competence protein F [Haemophilus influenzae PittEE], gi\|148715446\|... gi\|59939228 - gi\|59939228\|gb\|AAX12386.1\| ComF [Haemophilus influenzae] gi\|68249034, gi\|... - gi\|68249034\|ref\|YP_248146.1\| competence protein F [Haemophilus influenzae 86-028NP], gi\|68057233\|gb\|...	149.0	[0..1]	[226..1]
gi\|145272251, gi... - gi\|145638656\|ref\|ZP_01794265.1\| hypothetical protein CGSHiII_08076 [Haemophilus influenzae PittII], ... gi\|145628804, gi... - gi\|145628804\|ref\|ZP_01784604.1\| competence protein F [Haemophilus influenzae 22.1-21], gi\|144979274\|... gi\|53733261 - gi\|53733261\|ref\|ZP_00156270.2\| COG1040: Predicted amidophosphoribosyltransferases [Haemophilus influ...	149.0	[0..1]	[226..1]
gi\|113461631, gi... - gi\|113461631\|ref\|YP_719700.1\| competence protein [Haemophilus somnus 129PT], gi\|112823674\|gb\|ABI2576...	149.0	[0..1]	[226..1]
COMF_HAEIN - Competence protein F OS=Haemophilus influenzae GN=comF PE=3 SV=1 COMF_HAEIN - Competence protein F OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=comF P...	149.0	[0..1]	[226..2]
gi\|46156881, gi\|... - gi\|46156881\|ref\|ZP_00131899.2\| COG1040: Predicted amidophosphoribosyltransferases [Haemophilus somnu...	148.0	[0..1]	[226..1]

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Predicted Domain #1

Region A:
Residues: [1-228]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTFLDLLFPP KTSCIVCNAS IKSGYLCDRC KASLEIINGK RCRICGKPLK EGEICSDCLK  60
   61 TPHYFKQNVS PFEYEGVVKE LIGKFKYFNE RHLASFFADY MADAVKNMGW NIEVIVPVPL 120
  121 HRIRLDERGY NQSELLAREL SYRLNIFMSK ALRRVKNTTT QTALHREERM ENVKGAFKVT 180
  181 YKDTIEGKNV LLVDDVLTTG ATLDECAKAL KENGAKEVYV VTIATGRM

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	30.0
Match:	1dkrA
Description:	Phosphoribosylpyrophosphate synthetase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	2.13215401486422	bayes_pls_golite062009
transferase activity	2.01480567121657	bayes_pls_golite062009
diphosphotransferase activity	1.2980439591794	bayes_pls_golite062009
transferase activity, transferring pentosyl groups	0.899227917236164	bayes_pls_golite062009
transferase activity, transferring glycosyl groups	0.782718700399924	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: