YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|20807466, gi\|...
Organism:	Thermoanaerobacter tengcongensis MB4
Length:	168 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|20807466, gi|....

Description	E-value	Query Range	Subject Range
gi\|76796858, gi\|... - gi\|76796858\|ref\|ZP_00779208.1\| Peptidase C56, PfpI [Thermoanaerobacter ethanolicus ATCC 33223], gi\|7... gi\|241904491, gi... - gi\|241904491\|ref\|ZP_04789183.1\| intracellular protease, PfpI family [Thermoanaerobacter brockii subs...	184.0	[0..1]	[168..1]
gi\|255114788, gi... - gi\|255253661\|ref\|ZP_05333232.1\| intracellular protease, PfpI family [Thermoanaerobacter italicus Ab9... gi\|166854258, gi... - gi\|167040018\|ref\|YP_001663003.1\| PfpI family intracellular peptidase [Thermoanaerobacter sp. X514], ... gi\|242257006, gi... - gi\|242257006\|ref\|ZP_04801884.1\| intracellular protease, PfpI family [Thermoanaerobacter sp. X513], g...	183.0	[0..1]	[168..1]
gi\|19916492, gi\|... - gi\|20091359\|ref\|NP_617434.1\| intracellular protease I [Methanosarcina acetivorans C2A], gi\|19916492\|...	169.0	[0..3]	[168..2]
gi\|113941739, gi... - gi\|159897361\|ref\|YP_001543608.1\| PfpI family intracellular peptidase [Herpetosiphon aurantiacus ATCC...	168.0	[0..2]	[167..8]
PFPI_PYRFU - Intracellular protease 1 OS=Pyrococcus furiosus GN=pfpI PE=1 SV=1 PFPI_PYRFU - Intracellular protease 1 OS=Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=p...	167.0	[0..3]	[168..2]
gi\|88804457, gi\|... - gi\|88804457\|ref\|ZP_01119977.1\| putative intracellular protease, PfpI family protein [Robiginitalea b...	165.0	[0..1]	[168..1]
gi\|5103958, gi\|1... - gi\|5103958\|dbj\|BAA79274.1\| protease I [Aeropyrum pernix K1], gi\|14600627\|ref\|NP_147144.1\| protease I... gi\|7449378 - pir\|\|F72722 hypothetical protein APE0319 - Aeropyrum pernix (strain K1)	165.0	[0..1]	[168..1]
gi\|76591624, gi\|... - gi\|76793114\|ref\|ZP_00775606.1\| Peptidase C56, PfpI [Pseudoalteromonas atlantica T6c], gi\|76591624\|gb...	165.0	[0..2]	[168..8]
PFPI_PYRHO - Intracellular protease 1 OS=Pyrococcus horikoshii GN=pfpI PE=1 SV=1 PFPI_PYRHO - Intracellular protease 1 OS=Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC ...	165.0	[0..3]	[168..2]
gi\|83848572, gi\|... - gi\|83857205\|ref\|ZP_00950733.1\| proteinase [Croceibacter atlanticus HTCC2559], gi\|83848572\|gb\|EAP8644...	164.0	[0..2]	[168..14]

Back

Predicted Domain #1

Region A:
Residues: [1-168]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKRVAILIEN LYEEPELLYP YYRLKEEGYE VHLVGTEKDK VYTGKYGYPM KSTHASKEVK  60
   61 ADDYDAVVIP GGYSPDHMRR CQDTVNFVKE MCQQQKIIAA ICHGPWMMAS SCDLKGKRVT 120
  121 SFFSIKDDLI NAGAQYVDEE VVIDGNLITS RTPNDLVAFV KAIIEKLK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	41.30103
Match:	1g2iA
Description:	Intracellular protease
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.907927188800141	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: