YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|20807665, gi\|...
Organism:	Thermoanaerobacter tengcongensis MB4
Length:	274 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|20807665, gi|....

Description	E-value	Query Range	Subject Range
gi\|18893947, gi\|... - gi\|18978144\|ref\|NP_579501.1\| 2-oxoglutarate ferredoxin oxidoreductase subunit beta [Pyrococcus furio...	232.0	[0..2]	[271..6]
gi\|20516345, gi\|... - gi\|20807788\|ref\|NP_622959.1\| 2-oxoglutarate ferredoxin oxidoreductase subunit beta [Thermoanaerobact... gi\|20807788 - gi\|20807788\|ref\|NP_622959.1\| ferrodoxin oxidoreductase beta subunit [Thermoanaerobacter tengcongensi... gi\|254478665, gi... - gi\|254478665\|ref\|ZP_05092036.1\| Thiamine pyrophosphate enzyme, C-terminal TPP binding domain protein...	232.0	[0..1]	[270..1]
gi\|5457940, gi\|1... - gi\|5457940\|emb\|CAB49430.1\| korB-2 2-ketoglutarate ferredoxin oxidoreductase, subunit beta [Pyrococcu... gi\|5457940, gi\|7... - pir\|\|G75168 2-ketoglutarate ferredoxin oxidoreductase, chain beta (korb-2) PAB0347 - Pyrococcus aby...	232.0	[0..2]	[271..6]
gi\|14591430, gi\|... - gi\|3258090\|dbj\|BAA30773.1\| 281aa long hypothetical ferredoxin oxidoreductase beta subunit [Pyrococcu... gi\|7431591 - pir\|\|E71046 probable ferredoxin oxidoreductase beta subunit - Pyrococcus horikoshii	229.0	[0..2]	[271..6]
gi\|158140801, gi... - gi\|158320602\|ref\|YP_001513109.1\| 2-oxoglutarate ferredoxin oxidoreductase subunit beta [Alkaliphilus...	229.0	[0..1]	[271..1]
gi\|77638153, gi\|... - gi\|77686069\|ref\|ZP_00801441.1\| Thiamine pyrophosphate enzyme, C-terminal TPP-binding [Alkaliphilus m...	226.0	[0..1]	[271..1]
gi\|110602061, gi... - gi\|222055756\|ref\|YP_002538118.1\| thiamine pyrophosphate protein domain protein TPP-binding [Geobacte...	225.0	[0..6]	[270..5]
KORB_METJA - 2-oxoglutarate synthase subunit korB OS=Methanocaldococcus jannaschii GN=korB PE=4 SV=1 KORB_METJA - 2-oxoglutarate synthase subunit KorB OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 ...	225.0	[0..8]	[271..6]
gi\|57159383, gi\|... - gi\|57641059\|ref\|YP_183537.1\| 2-oxoglutarate ferredoxin oxidoreductase subunit beta [Thermococcus kod...	224.0	[0..2]	[271..6]
gi\|166856398, gi... - gi\|76796390\|ref\|ZP_00778753.1\| Thiamine pyrophosphate enzyme, C-terminal TPP-binding [Thermoanaeroba... gi\|242256657, gi... - gi\|242256657\|ref\|ZP_04801544.1\| thiamine pyrophosphate protein domain protein TPP-binding [Thermoana... gi\|241902747, gi... - gi\|241902747\|ref\|ZP_04787478.1\| thiamine pyrophosphate protein domain protein TPP-binding [Thermoana... gi\|166854466, gi... - gi\|167040226\|ref\|YP_001663211.1\| 2-oxoglutarate ferredoxin oxidoreductase subunit beta [Thermoanaero...	224.0	[0..1]	[270..1]

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Predicted Domain #1

Region A:
Residues: [1-274]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASRLVEEYF RKETLPNIWC PGCSNGIVAM AIVRAIDNLK IGKDKVVVVS GIGCSSRASG  60
   61 YLDFNTLHTT HGRAIAFATG VKFANPELTV IVITGDGDNA AIGGNHFIHA ARRNIDITVV 120
  121 MYNNHIYGMT GGQASPTIPR YDKATTAPYG SIDRDFDICK LAIGAGATYV ARGTAYHVQQ 180
  181 LVKLIEKGIS HKGFSFIEAM SICPTYYGRR NKKGSPADML KWLKDNSIDI NKAAKMKPEE 240
  241 LEGKIIIGEF VNIEAPEYTE EYQKMVERLK VSVK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	39.69897
Match:	1qgdA
Description:	Transketolase (TK), Pyr module; Transketolase (TK), PP module; Transketolase (TK), C-domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	2.62581591393304	bayes_pls_golite062009
oxidoreductase activity	1.76278237247276	bayes_pls_golite062009
oxidoreductase activity, acting on the aldehyde or oxo group of donors	1.33446932713773	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: