YRC Public Data Repository - Protein Structure Prediction

Protein:	AROE_CALS4
Organism:	Thermoanaerobacter tengcongensis MB4
Length:	280 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for AROE_CALS4.

Description	E-value	Query Range	Subject Range
gi\|167037479, gi... - gi\|76797197\|ref\|ZP_00779533.1\| Quinate/Shikimate 5-dehydrogenase [Thermoanaerobacter ethanolicus ATC...	283.0	[0..1]	[278..1]
gi\|114845254, gi... - gi\|167040141\|ref\|YP_001663126.1\| shikimate 5-dehydrogenase [Thermoanaerobacter sp. X514], gi\|1668543...	282.0	[0..1]	[278..1]
AROE_METKA - Shikimate dehydrogenase OS=Methanopyrus kandleri GN=aroE PE=3 SV=1 AROE_METKA - Shikimate dehydrogenase (NADP(+)) OS=Methanopyrus kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC...	261.0	[0..2]	[280..6]
gi\|170127636, gi... - gi\|170707392\|ref\|ZP_02897846.1\| shikimate 5-dehydrogenase [Bacillus anthracis str. A0389], gi\|170127... gi\|21402380, gi\|... - gi\|65321706\|ref\|ZP_00394665.1\| COG0169: Shikimate 5-dehydrogenase [Bacillus anthracis str. A2012], r... gi\|229268320, gi... - gi\|229603912\|ref\|YP_002868624.1\| shikimate dehydrogenase [Bacillus anthracis str. A0248], gi\|2292683... gi\|47529857, gi\|... - gi\|47529857\|ref\|YP_021206.1\| shikimate 5-dehydrogenase [Bacillus anthracis str. 'Ames Ancestor'], gi... gi\|30264406, gi\|... - gi\|30264406\|ref\|NP_846783.1\| shikimate 5-dehydrogenase [Bacillus anthracis str. Ames], gi\|30259064\|g...	254.0	[0..8]	[280..3]
AROE_ALKMQ - Shikimate dehydrogenase (NADP(+)) OS=Alkaliphilus metalliredigens (strain QYMF) GN=aroE PE=3 SV=1	251.0	[0..2]	[276..4]
AROE_BACC1 - Shikimate dehydrogenase (NADP(+)) OS=Bacillus cereus (strain ATCC 10987 / NRS 248) GN=aroE PE=3 SV=1	250.0	[0..8]	[280..3]
AROE_BACWK - Shikimate dehydrogenase (NADP(+)) OS=Bacillus weihenstephanensis (strain KBAB4) GN=aroE PE=3 SV=1	249.0	[0..8]	[280..3]
AROE_BACHK - Shikimate dehydrogenase (NADP(+)) OS=Bacillus thuringiensis subsp. konkukian (strain 97-27) GN=aroE ... gi\|196029858, gi... - gi\|196039231\|ref\|ZP_03106537.1\| shikimate 5-dehydrogenase [Bacillus cereus NVH0597-99], gi\|196029858... AROE_BACHK - Shikimate dehydrogenase OS=Bacillus thuringiensis subsp. konkukian GN=aroE PE=3 SV=1	248.0	[0..8]	[280..3]
gi\|47569330, gi\|... - gi\|47569330\|ref\|ZP_00240014.1\| shikimate 5-dehydrogenase [Bacillus cereus G9241], gi\|47554001\|gb\|EAL...	248.0	[0..8]	[280..3]
gi\|67849601, gi\|... - gi\|67916466\|ref\|ZP_00510176.1\| Shikimate/quinate 5-dehydrogenase [Clostridium thermocellum ATCC 2740...	248.0	[0..2]	[267..6]

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Predicted Domain #1

Region A:
Residues: [1-280]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKIDSTTKVF GLIGHPVKHS LSPLIHNSSF EKLNFNGVYV VFDVAPELLE NAVKGLKALG  60
   61 IKGFNVTVPH KESVMNYLDF VTEEAEKIGA VNTVVNENGI LKGYNTDVQG FIDSLKELKE 120
  121 DVRGRKAFVL GAGGASKAIC FALAREGVES IVIANRTLNK AKALAEYIRE EFKMKCDYCS 180
  181 IEEVEKFNEI DILINTTSVG MHPEVGNSPV SEEVVAKANF VYDLIYNPSE TLFLKYARKN 240
  241 GVKSANGLSM LVNQASYAFY LWTGEFFDKD FVYEKIRGEM

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	62.69897
Match:	2hk7A
Description:	No description for 2hk7A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits