YRC Public Data Repository - Protein Structure Prediction

Protein:	AROK_THETN
Organism:	Caldanaerobacter subterraneus subsp. tengcongensis
Length:	171 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for AROK_THETN.

Description	E-value	Query Range	Subject Range
gi\|207089357 - gi\|207089357\|gb\|EDZ66629.1\| shikimate kinase [Nitrosococcus oceani AFC27] AROK_NITOC - Shikimate kinase OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) GN=aroK PE=3 SV=1 gi\|224409703, gi... - gi\|254436246\|ref\|ZP_05049753.1\| shikimate kinase [Nitrosococcus oceani AFC27], gi\|224409703\|ref\|YP_0...	157.0	[0..3]	[170..5]
AROK_PSEPF - Shikimate kinase OS=Pseudomonas fluorescens (strain Pf0-1) GN=aroK PE=3 SV=1	157.0	[0..1]	[171..1]
AROK_THICR - Shikimate kinase OS=Thiomicrospira crunogena (strain XCL-2) GN=aroK PE=3 SV=1	157.0	[0..3]	[169..5]
AROK_ANAVT - Shikimate kinase OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=aroK PE=3 SV=1	157.0	[0..3]	[165..9]
gi\|94312198, gi\|... - gi\|94312198\|ref\|YP_585408.1\| shikimate kinase [Ralstonia metallidurans CH34], gi\|93356050\|gb\|ABF1013...	157.0	[0..3]	[166..37]
AROK_NOSS1 - Shikimate kinase OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=aroK PE=3 SV=1 gi\|25288026 - pir\|\|AI1961 shikimate kinase [imported] - Nostoc sp. (strain PCC 7120)	157.0	[0..3]	[165..9]
gi\|148263876, gi... - gi\|88936651\|ref\|ZP_01142254.1\| shikimate kinase [Geobacter uraniumreducens Rf4], gi\|88916591\|gb\|EAR3...	155.0	[0..1]	[167..1]
AROK_PSEF5 - Shikimate kinase OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=aroK PE=3 SV=1	155.0	[0..1]	[171..1]
gi\|77954140, gi\|... - gi\|77954140\|ref\|ZP_00818540.1\| shikimate kinase [Marinobacter aquaeolei VT8], gi\|77867008\|gb\|EAO9829...	155.0	[0..2]	[171..5]
AROK_VIBPA - Shikimate kinase OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633) GN=aroK PE=3 SV=1 AROK_VIBPA - Shikimate kinase OS=Vibrio parahaemolyticus GN=aroK PE=3 SV=1 gi\|91227283, gi\|... - gi\|91227283\|ref\|ZP_01261708.1\| shikimate kinase I [Vibrio alginolyticus 12G01], gi\|91188677\|gb\|EAS74...	155.0	[0..2]	[168..5]

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Predicted Domain #1

Region A:
Residues: [1-171]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKNIVLTGFM GTGKTTVGKK VATTLHFNFI DTDKLVEKMA GMSVAEIFEK HGEEYFRKLE  60
   61 KAAVIKASRL KNHVIATGGG VVLNPSNIVQ LRKNGVIILL KARPEVILRN ISKTKDRPLL 120
  121 AVEDPEKRIR ELLEEREPFY RFADYTIDVS DKTIEEVAEE VIRAYIKLKG R

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	35.522879
Match:	1kagA
Description:	Shikimate kinase (AroK)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.37148167194523	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: