YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|20807793
Organism:	Caldanaerobacter subterraneus subsp. tengcongensis
Length:	206 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|20807793.

Description	E-value	Query Range	Subject Range
gi\|146273747, gi... - gi\|98662370\|dbj\|GAA00697.1\| unnamed protein product [Pelotomaculum thermopropionicum SI], gi\|1476776...	205.0	[0..1]	[202..1]
gi\|134299758, gi... - gi\|88944800\|ref\|ZP_01148024.1\| Phosphoglycerate mutase/fructose-2,6-bisphosphatase [Desulfotomaculum...	203.0	[0..3]	[202..4]
gi\|7451675 - pir\|\|A70471 phosphoglycerate mutase 1 - Aquifex aeolicus gi\|15606984, gi\|... - gi\|2984221\|gb\|AAC07750.1\| phosphoglycerate mutase [Aquifex aeolicus VF5], gi\|15606984\|ref\|NP_214366....	193.0	[0..2]	[204..1]
gi\|83572867, gi\|... - gi\|83589953\|ref\|YP_429962.1\| phosphoglycerate mutase [Moorella thermoacetica ATCC 39073], gi\|8357286...	192.0	[0..2]	[204..3]
gi\|15026080, gi\|... - gi\|15896273\|ref\|NP_349622.1\| phosphoglycerate mutase [Clostridium acetobutylicum ATCC 824], gi\|15026... gi\|25331550 - pir\|\|G97271 probable phosphoglycerate mutase [imported] - Clostridium acetobutylicum	191.0	[0..1]	[205..1]
gi\|242231833, gi... - gi\|242256669\|ref\|ZP_04801556.1\| Phosphoglycerate mutase [Thermoanaerobacter sp. X513], gi\|242231833\|... gi\|166854478, gi... - gi\|167040238\|ref\|YP_001663223.1\| phosphoglycerate mutase [Thermoanaerobacter sp. X514], gi\|166854478...	189.0	[0..1]	[206..1]
gi\|76588241, gi\|... - gi\|76796379\|ref\|ZP_00778742.1\| Phosphoglycerate/bisphosphoglycerate mutase [Thermoanaerobacter ethan... gi\|241884465, gi... - gi\|241903241\|ref\|ZP_04787968.1\| Phosphoglycerate mutase [Thermoanaerobacter brockii subsp. finnii Ak...	189.0	[0..1]	[206..1]
gi\|67917134, gi\|... - gi\|67917134\|ref\|ZP_00510806.1\| Phosphoglycerate/bisphosphoglycerate mutase [Clostridium thermocellum...	189.0	[0..5]	[202..38]
gi\|91785167, gi\|... - gi\|91785167\|ref\|YP_560373.1\| phosphoglycerate mutase [Burkholderia xenovorans LB400], gi\|91689121\|gb...	185.0	[0..1]	[205..1]

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Predicted Domain #1

Region A:
Residues: [1-206]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVTRLYIARH GQSKWNLESR MQGMKDIELT QLGLEQAELL AKRLKGENID CIYSSDLKRA  60
   61 YTTAEIISKE INAPIVKIEE FREMSFGVWE GLTAKEIEEN YQELYDLWKT DPRHVLIENA 120
  121 ETLKEVQKRM LTKTKEIVEE NWGKNILIVS HGTSIKALIL GLLEIDLSFY PSFRMDNASL 180
  181 SIIDIKENKK AVLVLYNDTC HLGERK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	43.39794
Match:	1h2eA
Description:	Broad specificity phosphatase PhoE (YhfR)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
phosphoglycerate mutase activity	3.38777226675734	bayes_pls_golite062009
phosphofructokinase activity	3.23286891159765	bayes_pls_golite062009
fructose-2,6-bisphosphate 2-phosphatase activity	2.79017097989614	bayes_pls_golite062009
6-phosphofructo-2-kinase activity	2.66778782568695	bayes_pls_golite062009
carbohydrate kinase activity	1.86382423322759	bayes_pls_golite062009
carbohydrate phosphatase activity	1.56016941506609	bayes_pls_golite062009
catalytic activity	1.37714494241232	bayes_pls_golite062009
binding	1.30564602924126	bayes_pls_golite062009
hydrolase activity, acting on ester bonds	1.05740895199147	bayes_pls_golite062009
hydrolase activity	0.959714350381009	bayes_pls_golite062009
intramolecular transferase activity, phosphotransferases	0.916759493094631	bayes_pls_golite062009
isomerase activity	0.275500708652009	bayes_pls_golite062009
phosphatase activity	0.265410208825198	bayes_pls_golite062009
phosphoric ester hydrolase activity	0.211236676964713	bayes_pls_golite062009
intramolecular transferase activity	0.17180601190736	bayes_pls_golite062009
protein binding	0.136916442724833	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: