YRC Public Data Repository - Protein Structure Prediction

Protein:	SPEH_CALS4
Organism:	Thermoanaerobacter tengcongensis MB4
Length:	124 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPEH_CALS4.

Description	E-value	Query Range	Subject Range
SPEH_CLOTH - S-adenosylmethionine decarboxylase proenzyme OS=Clostridium thermocellum (strain ATCC 27405 / DSM 12...	189.0	[0..1]	[124..1]
SPEH_CALS8 - S-adenosylmethionine decarboxylase proenzyme OS=Caldicellulosiruptor saccharolyticus (strain ATCC 43... SPEH_CALBD - S-adenosylmethionine decarboxylase proenzyme OS=Caldicellulosiruptor bescii (strain ATCC BAA-1888 / ...	187.0	[0..1]	[124..1]
SPEH_CLOTE - S-adenosylmethionine decarboxylase proenzyme OS=Clostridium tetani (strain Massachusetts / E88) GN=s... SPEH_CLOTE - S-adenosylmethionine decarboxylase proenzyme OS=Clostridium tetani GN=speH PE=3 SV=1	186.0	[0..1]	[122..1]
gi\|242256677, gi... - gi\|242256677\|ref\|ZP_04801564.1\| S-adenosylmethionine decarboxylase proenzyme [Thermoanaerobacter sp.... gi\|241884457, gi... - gi\|241903233\|ref\|ZP_04787960.1\| S-adenosylmethionine decarboxylase proenzyme [Thermoanaerobacter bro... SPEH_THEPX - S-adenosylmethionine decarboxylase proenzyme OS=Thermoanaerobacter sp. (strain X514) GN=speH PE=3 SV... SPEH_THEP3 - S-adenosylmethionine decarboxylase proenzyme OS=Thermoanaerobacter pseudethanolicus (strain ATCC 332...	182.0	[0..1]	[124..1]
gi\|89894982, gi\|... - gi\|89894982\|ref\|YP_518469.1\| S-adenosylmethionine decarboxylase proenzyme [Desulfitobacterium hafnie... gi\|68167209, gi\|... - gi\|68208905\|ref\|ZP_00560987.1\| Adenosylmethionine decarboxylase [Desulfitobacterium hafniense DCB-2]...	178.0	[0..2]	[124..3]
SPEH_BACCN - S-adenosylmethionine decarboxylase proenzyme OS=Bacillus cytotoxicus (strain DSM 22905 / CIP 110041 ...	175.0	[0..1]	[122..4]
gi\|88945067, gi\|... - gi\|88945067\|ref\|ZP_01148287.1\| Adenosylmethionine decarboxylase [Desulfotomaculum reducens MI-1], gi...	175.0	[0..1]	[114..1]
SPEH1_BACCR - S-adenosylmethionine decarboxylase proenzyme 1 OS=Bacillus cereus (strain ATCC 14579 / DSM 31 / JCM ... gi\|49330368, gi\|... - gi\|49478812\|ref\|YP_038627.1\| S-adenosylmethionine decarboxylase proenzyme [Bacillus thuringiensis se... SPEH1_BACCZ - S-adenosylmethionine decarboxylase proenzyme 1 OS=Bacillus cereus (strain ZK / E33L) GN=speH1 PE=3 S... gi\|47505270, gi\|... - gi\|47530122\|ref\|YP_021471.1\| S-adenosylmethionine decarboxylase proenzyme [Bacillus anthracis str. '... gi\|49187472, gi\|... - gi\|49187472\|ref\|YP_030724.1\| S-adenosylmethionine decarboxylase proenzyme [Bacillus anthracis str. S... gi\|30264651, gi\|... - gi\|30264651\|ref\|NP_847028.1\| S-adenosylmethionine decarboxylase proenzyme [Bacillus anthracis str. A... SPEH_BACC1 - S-adenosylmethionine decarboxylase proenzyme OS=Bacillus cereus (strain ATCC 10987 / NRS 248) GN=spe... SPEH1_BACAN - S-adenosylmethionine decarboxylase proenzyme 1 OS=Bacillus anthracis GN=speH1 PE=3 SV=1 gi\|218163663, gi... - gi\|218235706\|ref\|YP_002369377.1\| S-adenosylmethionine decarboxylase proenzyme [Bacillus cereus B4264... gi\|217064607, gi... - gi\|217962060\|ref\|YP_002340630.1\| S-adenosylmethionine decarboxylase proenzyme [Bacillus cereus AH187... gi\|218905808, gi... - gi\|218905808\|ref\|YP_002453642.1\| S-adenosylmethionine decarboxylase proenzyme [Bacillus cereus AH820... gi\|218899734, gi... - gi\|218899734\|ref\|YP_002448145.1\| S-adenosylmethionine decarboxylase proenzyme [Bacillus cereus G9842... gi\|196040802, gi... - gi\|196040802\|ref\|ZP_03108100.1\| S-adenosylmethionine decarboxylase proenzyme [Bacillus cereus NVH059... gi\|118479729, gi... - gi\|118479729\|ref\|YP_896880.1\| S-adenosylmethionine decarboxylase proenzyme [Bacillus thuringiensis s... gi\|196032737, gi... - gi\|196032737\|ref\|ZP_03100150.1\| S-adenosylmethionine decarboxylase proenzyme [Bacillus cereus W], gi... gi\|206977165, gi... - gi\|206977165\|ref\|ZP_03238064.1\| S-adenosylmethionine decarboxylase proenzyme [Bacillus cereus H3081.... gi\|196047485, gi... - gi\|196047485\|ref\|ZP_03114696.1\| S-adenosylmethionine decarboxylase proenzyme [Bacillus cereus 03BB10... gi\|228792011, gi... - gi\|228967678\|ref\|ZP_04128698.1\| S-adenosylmethionine decarboxylase 1 alpha chain [Bacillus thuringie... gi\|229264638, gi... - gi\|229600230\|ref\|YP_002868860.1\| S-adenosylmethionine decarboxylase proenzyme [Bacillus anthracis st... gi\|190569040, gi... - gi\|190569040\|ref\|ZP_03021940.1\| S-adenosylmethionine decarboxylase proenzyme [Bacillus anthracis Tsi... gi\|225866558, gi... - gi\|225866558\|ref\|YP_002751936.1\| S-adenosylmethionine decarboxylase proenzyme [Bacillus cereus 03BB1... SPEH_BACWK - S-adenosylmethionine decarboxylase proenzyme OS=Bacillus weihenstephanensis (strain KBAB4) GN=speH P... gi\|227817365, gi... - gi\|227817365\|ref\|YP_002817374.1\| S-adenosylmethionine decarboxylase proenzyme [Bacillus anthracis st... gi\|254736689 - gi\|254736689\|ref\|ZP_05194395.1\| S-adenosylmethionine decarboxylase proenzyme [Bacillus anthracis str... gi\|254739530 - gi\|254739530\|ref\|ZP_05197226.1\| S-adenosylmethionine decarboxylase proenzyme [Bacillus anthracis str... gi\|254686926 - gi\|254686926\|ref\|ZP_05150784.1\| S-adenosylmethionine decarboxylase proenzyme [Bacillus anthracis str... gi\|254720898 - gi\|254720898\|ref\|ZP_05182689.1\| S-adenosylmethionine decarboxylase proenzyme [Bacillus anthracis str... gi\|254754676 - gi\|254754676\|ref\|ZP_05206711.1\| S-adenosylmethionine decarboxylase proenzyme [Bacillus anthracis str... gi\|254757508 - gi\|254757508\|ref\|ZP_05209535.1\| S-adenosylmethionine decarboxylase proenzyme [Bacillus anthracis str... gi\|221242101, gi... - gi\|222098043\|ref\|YP_002532100.1\| S-adenosylmethionine decarboxylase proenzyme [Bacillus cereus Q1], ...	174.0	[0..1]	[122..4]
gi\|52081404, gi\|... - gi\|52081404\|ref\|YP_080195.1\| S-adenosylmethionine decarboxylase proenzyme [Bacillus licheniformis AT...	174.0	[0..1]	[122..1]
SPEH_MOOTA - S-adenosylmethionine decarboxylase proenzyme OS=Moorella thermoacetica (strain ATCC 39073) GN=speH P...	174.0	[0..1]	[122..1]

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Predicted Domain #1

Region A:
Residues: [1-124]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNALGRHILA EVYGCDSRIL DDVEMIEDIM VQAAIATGAE VREVAFHKFN PQGVSGVVVI  60
   61 SESHLTIHTW PELGYAAVDV FTCGDHVNPW DGVNYIARML KAENMTATEV KRGVFEKPVK 120
  121 VANF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	42.39794
Match:	1vr7A
Description:	Crystal structure of S-adenosylmethionine decarboxylase proenzyme (TM0655) from THERMOTOGA MARITIMA at 1.2 A resolution
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits